Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13980 1306 / 0 Glycosyl hydrolase family 38 protein (.1.2.3) AT3G26720 1139 / 0 Glycosyl hydrolase family 38 protein (.1.2) AT5G66150 974 / 0 Glycosyl hydrolase family 38 protein (.1) AT5G14950 225 / 1e-60 GMII, ATGMII golgi alpha-mannosidase II (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035111 [exp] 1580 / 0 AT5G13980 1467 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10012577 [exp] 1498 / 0 AT5G13980 1483 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10041516 [exp] 1412 / 0 AT5G13980 1347 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Lus10012578 [exp] 1088 / 0 AT3G26720 1405 / 0.0 Glycosyl hydrolase family 38 protein (.1.2) Lus10025960 [exp] 789 / 0 AT5G66150 1097 / 0.0 Glycosyl hydrolase family 38 protein (.1) Lus10014259 [exp] 708 / 0 AT3G26720 959 / 0.0 Glycosyl hydrolase family 38 protein (.1.2) Lus10039457 [exp] 241 / 8e-66 AT5G14950 1573 / 0.0 golgi alpha-mannosidase II (.1) Lus10015337 [exp] 231 / 2e-62 AT5G14950 1506 / 0.0 golgi alpha-mannosidase II (.1) Lus10014507 [exp] 223 / 1e-59 AT5G14950 1552 / 0.0 golgi alpha-mannosidase II (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G143600 [exp] 1392 / 0 AT5G13980 1535 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Potri.012G106500 [exp] 1224 / 0 AT5G13980 1437 / 0.0 Glycosyl hydrolase family 38 protein (.1.2.3) Potri.002G238200 [exp] 1144 / 0 AT3G26720 1477 / 0.0 Glycosyl hydrolase family 38 protein (.1.2) Potri.007G056300 [exp] 1026 / 0 AT5G66150 1428 / 0.0 Glycosyl hydrolase family 38 protein (.1) Potri.001G350400 [exp] 246 / 2e-67 AT5G14950 1678 / 0.0 golgi alpha-mannosidase II (.1) Potri.017G073900 [exp] 240 / 2e-65 AT5G14950 1672 / 0.0 golgi alpha-mannosidase II (.1) Potri.012G106401 [exp] 79 / 6e-17 AT5G13980 71 / 1e-10 Glycosyl hydrolase family 38 protein (.1.2.3) Potri.008G117400 [exp] 62 / 7e-10 AT5G14950 470 / 1e-157 golgi alpha-mannosidase II (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0158 [flax] [poplar] GH_CE PF01074 [flax] [poplar] Glyco_hydro_38N Glycosyl hydrolases family 38 N-terminal domain CL0103 [flax] [poplar] Gal_mutarotase PF07748 [flax] [poplar] Glyco_hydro_38C Glycosyl hydrolases family 38 C-terminal domain CL0599 [flax] [poplar] GH57_38_middle PF09261 [flax] [poplar] Alpha-mann_mid Alpha mannosidase middle domain
Representative CDS sequence Show only first row Show all	>Lus10036074 pacid=23141019 polypeptide=Lus10036074 locus=Lus10036074.g ID=Lus10036074.BGIv1.0 annot-version=v1.0 ATGATAGAGCTAAGACCACCAGAAACATGGGTGTTTACTAATGCTGGCCTGATGCTCATGATGGTGCTTTTGATTCCAAGCGCGGAATCAAAGTACATGG CTTACAACACTTCTCAAGGCATAGTTGCTGATAAGCTCAATCTTCATTTGAACATTTTGGATTCTCTCATTCCGGCATTACTTGCTGATAAGAACCGCAA GTTCATCTATGTTGAAATTGCATTTTTTGAACGATGGTGGGATGATCAAAGTGAAGCAATGAAGCACATTGTCAAGCATCTTGTTTCATCGGGTCAGCTA GAGTTCATAAATGGAGGTATGTGCATGCACGACGAGGCAACGACCCATTACATTGACATGATTGACCAAACAACCCTAGGACATCGATTCCTCACGAGGG AATTTGGTGTGATACCCAGGATTGGCTGGCAAATTGATCCTTTTGGACATTCTGCAGTCCAGGCTTATTTGCTGGGAGCAGAAGTTGGTTTCGACTCTAT ATTCTTTGGTCGAATAGATTACCAGGACAGGGAAAAACGCAAAGGCGACAAGAGTCTGGAAATGGTCTGGCAAGGGTCCAAGAGTCTTCCTTCATCACAG ATTTTTGCTGGTGCATTCCCAACAAACTATGACCCTCCACCTGGTGGATTTTATTTAGAAGTCAATGATATATCCCCTATTGTACAAGATGACATGGATT TATCTGATTACAATCTTCCAGAACGATTAGAGGCCTTCATTGCTGCTGCTATATCTCAGGCGAATATTACTCGAACAAATCATATCATGTTTACAATGGG AACAGATTTCCAGTATCAGTATGCAACCACTTGGTTCCGCCCGATGGACAAGCTGATTCATTATTTGAACATGGATGGACGTGTTAATGCGTTCTACTCT ACTCCATCCATATATACCGACGCCAAACATTCTGCCAAAGAGGCCTGGCCGCTAAAGACTGAAGACTTTTTCCCTTATGCAGATAGTGCAAATGCTTTCT GGACAGGATACTTTACAAGTCGACCAGCTCTGAAACGATATATCAGAGTTATGAGTGGCTATTACTTGGCTGCAAGGCAACTAGAATTTTTCAAAGGCCG GAGTAGCATTGGGCCAAATACTGACTCATTGGCAGATGCAATGGCAATTGCTCAGCATCATGATGCTGTTACTGGGACGGAAAAACAACATGTAGCTTAC GATTATGCTGAACGGCTTGCAATTGGCTACACAGAGGCAGAAAAGGTAGTTGCAGCTTCACTCAGTTGCTTGTACGAATCCCAGTCTCATGCGGGTTGTC AAAGCCAAACAATAAAATTTGAACAGATTGCCTTGGTCTATAATTCTCTTGGTTGGTCAAGAGATGAAGTTATTCAAATTCCAGTTGCTAGTAATGATGT TGTTGTCCATGATTCCAGCGGGAATGAAGTGGAAGCTCAACTCATTCCTTTAGTGGAAGCCTATAGAAGATTGAGGAACTTCCATGTCCAAGCATACCTT GGTAGAGAACCGGATGGCACTCCGAAGTCTTGGCTTGCATTCAGAGTATCTATACCACCTCTTGGTTTCAGCACATATACAGTGTCCGCTTCTAAAATTG CAGGTGCTCACTCAACTGAACCATCTGTATACGAATCCAAAAGAAGTCATAGTCCCATTGTTAAAATGGGTCAGGGAAATTTGAAACTCACCCATTCTGC TTTACAAGGGAAGCCAAAGAGCTATATGAATGACAGGAGCTCGGTGGAGGAGCAAGTTCATCAGTCCTATAGTTACTATGGTGGGTACAATGGAACCAAT GACAAAAAACCTCAGAATGGTGGGGCGTACATCTTCAAGCCAAACGGGACATATCCCATAGGCTCTGAGAAACAGGTCCCTTTGACTGTTATTCATGGGC CTGTGGTAGAGGAAATACATGAAGAGATTAATGAATGGATATATCAGGTTACAAGACTATACAAAGGGAAAGAGCATGTCGAAGTTGAGTTTATAGTTGG TCCAATACCCATTGGCGATGGCATTGGTAAAGAAGTAGTAACTCAGATCACAACTTCCATGAAAACCAACAAAACATTCTATACAGATTCCAATGGACGT GATTTCATCAGAAGGATGCGTGATTATAGAACAGACTGGGACTTGGAAGTTACTGAACCAGTTGCTGGAAACTATTACCCGATTAATCTTGGTATCTATG CCAAAGATGACAAAAAAGAACTTTCGGTTCTCGTTGATCGGGCTCTTGGTGGAACTAGCATTAAGGATGGACAAATCGAGCTCCTACTTCATCGGAGACT GCTACTTGATGATGCCAGAGGTGTTGATGAGGCTCTAAATGAAACAGTTTGTGCGCATGAAAAATGCGTGGGATTAATGATCCAAGGAAGATACTATTAC AGAATCGACCCCATAGGAGAAGGTGCTAAATGGCGACGAACGTTTGGCCAGCAGATATCCTCACCCTTACTGTTAGCATTTGCAGAGGAGGAAACTGATA AACCAACTCACTCTTATGCAACTACCTTCTCAGGCTTGGCTCCATCCTACACATTACCTGATAATGTTGCTCTTATAACCCTACAGGAACTGGATGATGG GAAGGTTCTTCTTCGCTTAGCACATCTATACGAGGTTGGAGAAGACAAGGATCTTTCGGTGAAGAAAACAGTGGAACTAACAAAGCTGTTCCCTGGAAAG AAAATAGGGAAGGTGGTGGAAATGAGCTTATCTGCCAACCAAAAAAGGGCAGAAATGGAGAAGAAGAGACTTAACTGGAAATCAGAATCATCAACATCAT CATCATCATCAGAAGAGGGATTTACAAGGGGAAGGGCAGTTGATTATAAGAAGCTGGAGGTGGAATTATTCCCAATGGAAATCCGGACCTTTATCATTGA CATTGTTAGGGTTTAG
AA sequence Show only first row Show all	>Lus10036074 pacid=23141019 polypeptide=Lus10036074 locus=Lus10036074.g ID=Lus10036074.BGIv1.0 annot-version=v1.0 MIELRPPETWVFTNAGLMLMMVLLIPSAESKYMAYNTSQGIVADKLNLHLNILDSLIPALLADKNRKFIYVEIAFFERWWDDQSEAMKHIVKHLVSSGQL EFINGGMCMHDEATTHYIDMIDQTTLGHRFLTREFGVIPRIGWQIDPFGHSAVQAYLLGAEVGFDSIFFGRIDYQDREKRKGDKSLEMVWQGSKSLPSSQ IFAGAFPTNYDPPPGGFYLEVNDISPIVQDDMDLSDYNLPERLEAFIAAAISQANITRTNHIMFTMGTDFQYQYATTWFRPMDKLIHYLNMDGRVNAFYS TPSIYTDAKHSAKEAWPLKTEDFFPYADSANAFWTGYFTSRPALKRYIRVMSGYYLAARQLEFFKGRSSIGPNTDSLADAMAIAQHHDAVTGTEKQHVAY DYAERLAIGYTEAEKVVAASLSCLYESQSHAGCQSQTIKFEQIALVYNSLGWSRDEVIQIPVASNDVVVHDSSGNEVEAQLIPLVEAYRRLRNFHVQAYL GREPDGTPKSWLAFRVSIPPLGFSTYTVSASKIAGAHSTEPSVYESKRSHSPIVKMGQGNLKLTHSALQGKPKSYMNDRSSVEEQVHQSYSYYGGYNGTN DKKPQNGGAYIFKPNGTYPIGSEKQVPLTVIHGPVVEEIHEEINEWIYQVTRLYKGKEHVEVEFIVGPIPIGDGIGKEVVTQITTSMKTNKTFYTDSNGR DFIRRMRDYRTDWDLEVTEPVAGNYYPINLGIYAKDDKKELSVLVDRALGGTSIKDGQIELLLHRRLLLDDARGVDEALNETVCAHEKCVGLMIQGRYYY RIDPIGEGAKWRRTFGQQISSPLLLAFAEEETDKPTHSYATTFSGLAPSYTLPDNVALITLQELDDGKVLLRLAHLYEVGEDKDLSVKKTVELTKLFPGK KIGKVVEMSLSANQKRAEMEKKRLNWKSESSTSSSSSEEGFTRGRAVDYKKLEVELFPMEIRTFIIDIVRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13980			Glycosyl hydrolase family 38 p...		Lus10036074 [exp]	0	1
AT1G52500		ATMMH-2, ATMMH-...	FORMAMIDOPYRIMIDINE-DNA GLYCOS...		Lus10035876 [exp]	2.0	0.8392
					Lus10028270 [exp]	2.4	0.8491
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Lus10027219 [exp]	3.6	0.8522
AT4G19130			Replication factor-A protein 1...		Lus10003955 [exp]	4.0	0.8174
AT1G01880			5'-3' exonuclease family prote...		Lus10041375 [exp]	4.4	0.8119
AT5G53920			ribosomal protein L11 methyltr...		Lus10005914 [exp]	5.9	0.8313
AT2G30695			unknown protein		Lus10004791 [exp]	6.8	0.8092
AT5G39940			FAD/NAD(P)-binding oxidoreduct...		Lus10001121 [exp]	8.9	0.8292
AT1G72640			NAD(P)-binding Rossmann-fold s...		Lus10000373 [exp]	9.3	0.8422
AT3G56160			Sodium Bile acid symporter fam...		Lus10043443 [exp]	9.8	0.8323

Compare expression of checked genes

Lus10036074 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.