Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08760 655 / 0 Plant protein of unknown function (DUF936) (.1) AT2G43760 261 / 4e-81 molybdopterin biosynthesis MoaE family protein (.1.2.3) AT3G14170 175 / 1e-46 Plant protein of unknown function (DUF936) (.1) AT4G13370 161 / 4e-41 Plant protein of unknown function (DUF936) (.1) AT1G23790 157 / 2e-40 Plant protein of unknown function (DUF936) (.1) AT1G70340 155 / 6e-40 Plant protein of unknown function (DUF936) (.1) AT3G19610 141 / 1e-34 Plant protein of unknown function (DUF936) (.1) AT2G31920 109 / 2e-24 Plant protein of unknown function (DUF936) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026806 [exp] 1225 / 0 AT1G08760 732 / 0.0 Plant protein of unknown function (DUF936) (.1) Lus10026805 [exp] 382 / 6e-127 AT2G43760 261 / 1e-89 molybdopterin biosynthesis MoaE family protein (.1.2.3) Lus10008138 [exp] 173 / 1e-46 AT3G14170 350 / 8e-117 Plant protein of unknown function (DUF936) (.1) Lus10013007 [exp] 165 / 5e-46 AT1G23790 253 / 6e-82 Plant protein of unknown function (DUF936) (.1) Lus10013177 [exp] 172 / 2e-45 AT3G14170 459 / 9e-158 Plant protein of unknown function (DUF936) (.1) Lus10029158 [exp] 172 / 4e-45 AT1G70340 477 / 2e-164 Plant protein of unknown function (DUF936) (.1) Lus10002129 [exp] 162 / 2e-41 AT3G19610 260 / 9e-77 Plant protein of unknown function (DUF936) (.1) Lus10012367 [exp] 162 / 2e-41 AT3G19610 174 / 2e-46 Plant protein of unknown function (DUF936) (.1) Lus10043255 [exp] 153 / 3e-38 AT4G13370 652 / 0.0 Plant protein of unknown function (DUF936) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G026200 [exp] 858 / 0 AT1G08760 719 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.007G131600 [exp] 843 / 0 AT1G08760 674 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.001G272100 [exp] 293 / 5e-93 AT2G43760 270 / 6e-93 molybdopterin biosynthesis MoaE family protein (.1.2.3) Potri.003G070200 [exp] 176 / 8e-47 AT3G14170 458 / 2e-157 Plant protein of unknown function (DUF936) (.1) Potri.008G192300 [exp] 165 / 9e-43 AT1G23790 572 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.001G294600 [exp] 165 / 3e-42 AT3G19610 177 / 2e-47 Plant protein of unknown function (DUF936) (.1) Potri.018G072500 [exp] 164 / 5e-42 AT4G13370 719 / 0.0 Plant protein of unknown function (DUF936) (.1) Potri.009G024800 [exp] 151 / 3e-38 AT2G31920 293 / 1e-91 Plant protein of unknown function (DUF936) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06075 [flax] [poplar] DUF936 Plant protein of unknown function (DUF936) PF02391 [flax] [poplar] MoaE MoaE protein
Representative CDS sequence Show only first row Show all	>Lus10036076 pacid=23141228 polypeptide=Lus10036076 locus=Lus10036076.g ID=Lus10036076.BGIv1.0 annot-version=v1.0 ATGGCAAATCTTGTCCCTGGGGTTTTGCTCAAGCTCTTACAACACATGAATACAGATGTGAAGGTTGCTGGTGAGTATAGATCGTCATTGCTACAGGTGG TGAGCATTGTACCAGCACTAGCAGGTGGCGAACTATTCCCTAATCAAGGGTTTTATCTTAAGGTGTCTGATTCTTCTCATGCTACTTATGTCTCTTTACC CGAGGAGCATGATGATCTCATTCTAAGTGACAAGATTCAACTGGGACAATTCGTTCATGTTGAAAGGCTTGAAGCGGCCTCGCCAGTCCCTGTACTCAGA GGAGTTAAGCCAGTCCCAGGGAGGCATCCCTGTGTTGGAACCCCTGAGGACATTGTGGCCACTGATTCACTCAGCTTCCTCAACAATAATCTTGAACCAA GTTCTGGCTCGAAGCATTCTGACAGCGCAAAGACGCAGAGGAAAGGGGTTTCGGGTAATACTTATCCAGGACAGAAGGAGAAATTTTCATCCAGAAGTAG TAGTGCTAGCAAAGAGGATTTAAATTCTAAGAAAACATCTTCTCTGGTGAGGACTAAGTCCCAGTTGTCAAAAGCTCATTTGAACCTTGAATTGAAGAGA GATTCTCTCCCAAAATTGAAACCCTCGAGTTCAAGGTCAATTCCTTCTTCTCCAACTAGTTGTTACTCGTTACCTAATTCATTTGAGAAGTTTTCAAGTG GGGTTAAGCAGCAGGCTAAAATTAAGGGGTTGGATAAGGGTTCTCCTAGGATGGGACTAGCAGAAAGAACGAGTTCTACTAGTGGGGCTGCGACTGCTAG AAGAGTTCCCGTGATCAAGAACATAGTTCAGGGTATTGAGTTTGGAGCTAAGGCTTTGAGGAAGAGTTGGGAAGGAAGCATGGAAGTAAAGAAGAAGGAT TCCTCTAAATTGAAGGCTGCTAAACTGGAACTGAAACATGAAATTAGGAGTACCTCGGTTCCAAGGAAAAGTACGTCAAGTGAGCGTTCACTTCCTAGAG AAGACAGTAAGGCCTTTGCTAAGTCAAGCAAAGAGGAGAACAAAATTACTGTATCTTCTAAGAAAACTGTTGTTCCTGGGAATGGGATTATGGATGATCA AGAGAAGTTTAGTAAACACAGACTATCCTTTGGAAAGAGATCATCTGGAGAACTGGCTAATAATGGGCTGCCTGGAAACTTTGTCAAGGTTCCCATAAAT AGTAAAAGGCTGACTGAGGGGAATGTTTCATGGACTTCTCTTCCTTCTTCTCTCGCTAAGCTTGGAAAGGAAGTTATGAAGCATAGAGATGCTGCAGAGA CAGCAGCTATTGAAGCCATGCAGGAAGCGTGTGCTGCAGAGAGCTTGCTTAGATGTCTGGGGATATACTCAGAGCTAAAGTCTTCTGCCCAAGAAGACAA CCCGCAACCTGCTGTGGAGCTTTTCTTGGCTCTCCATGCAAGCTTGAACAATGTTCGTAATGTGACTGATTCTTTGTCTAAAATGGTTCCTCTTGGATCA TCACCAAACTCTAGTGAAGATCTATCTCAAGAAGTGCAGAAGATGACTGCAGATAGACGTAAACATGCAGCCTATTGGGTTCAAGCTGCATTGTCCACCA ATTTGTCGTCCTTCACTATTTTTACCAAAGAAGCAACTTCTACTTCGGTGCAGAACCAAAAGGCTTCTGCTGTTAACCAACATCTGCTAGTTCTGGAAAA CACTCCTAAAAATGCTGGCACAAAAGCTGAAGCGAAAAACCGGCCAGTGGTTGGCTCCAAGCTTGTAGCCACAGGTGCTTTCCGCAAACAGTTGGATCCT TCGAGTACCAGTCAAAAGGTGCAACCTCAACCACCTACAGAATGGCTAAGAGGGAATGGCCTTGACGAGGCAATGGACTTGGCTGAAACATTGCGGGTTG ATTCCCAGAATTGGTTCCTGGCATTTGTGGAGAGGTTCTTGGATGCAGATGTGGACACGTCAGCGCTATCGGATAACGGTCAAATAGCTGGGATGTTAAC TCAGCTGAAAAGTGTGAACGATTGGTTAGATGGGATTGGATCGAGCAAGGAAGAGGAAGAGGAAGAAGAAGAGATTCTGGGTGTTTCTTCTGAGACGGTT GATCGGCTAAGGAAGAAGATTTACGAGTATCTTCTAACACACGTGGAATCAGCTGCTGCTGCTCTGGGAGGAGGTAATGGTGGTGGTGGAGGATCACAAT CATCACCAAGGATCCGAACTGTGGACATAAAGCCGAAAAGGTATTTAACGACAAAGATGGAATATGAAGACAAGAACTTGATTGAAGTTTTGGAAGAAAA TGTGATCATTGACGTTGCCAAATACATGAGCTATGTAAGTGCTCCACATGCTGGTGCAATCTCAACATTTTCAGGAACAACTCGAGACAGCTTTGATGGG AAAACAGTGATGGAGCTGCGATACGAGGCATACGTGCCAATGGCAGTGCGCCAAATCAAATCCATTTGTTCAACTGCAAGAGCATCCTGGGAGATCCATG CCATAGCTGTTGCCCACCGGCTGGGTGCAGTTCCGGTGGGAGAAACGAGCATCTTCATTGCGGTATCAGCTGTTCACCGTGCTGATTCGTTGGACGCTTG TAAGTTTATGATTGATGAGTTGAAGGCAACTGTACCAATATGGAAGAAGGAGGTTTACTCAAACGGAGAAGTTTGGAAGGAGAATTCCGAGTTCATCGAA CGGAGATTGGCGCCTGGAAACACGAGGAATGACTGTTGCAAACTCAAAGTTGAGGTTGGTACACCAAGTGGTGTAAAAGCTTGCTGTAGACCTAAGGTCA AGGTTATTGATGAAGATAAAGTTTGA
AA sequence Show only first row Show all	>Lus10036076 pacid=23141228 polypeptide=Lus10036076 locus=Lus10036076.g ID=Lus10036076.BGIv1.0 annot-version=v1.0 MANLVPGVLLKLLQHMNTDVKVAGEYRSSLLQVVSIVPALAGGELFPNQGFYLKVSDSSHATYVSLPEEHDDLILSDKIQLGQFVHVERLEAASPVPVLR GVKPVPGRHPCVGTPEDIVATDSLSFLNNNLEPSSGSKHSDSAKTQRKGVSGNTYPGQKEKFSSRSSSASKEDLNSKKTSSLVRTKSQLSKAHLNLELKR DSLPKLKPSSSRSIPSSPTSCYSLPNSFEKFSSGVKQQAKIKGLDKGSPRMGLAERTSSTSGAATARRVPVIKNIVQGIEFGAKALRKSWEGSMEVKKKD SSKLKAAKLELKHEIRSTSVPRKSTSSERSLPREDSKAFAKSSKEENKITVSSKKTVVPGNGIMDDQEKFSKHRLSFGKRSSGELANNGLPGNFVKVPIN SKRLTEGNVSWTSLPSSLAKLGKEVMKHRDAAETAAIEAMQEACAAESLLRCLGIYSELKSSAQEDNPQPAVELFLALHASLNNVRNVTDSLSKMVPLGS SPNSSEDLSQEVQKMTADRRKHAAYWVQAALSTNLSSFTIFTKEATSTSVQNQKASAVNQHLLVLENTPKNAGTKAEAKNRPVVGSKLVATGAFRKQLDP SSTSQKVQPQPPTEWLRGNGLDEAMDLAETLRVDSQNWFLAFVERFLDADVDTSALSDNGQIAGMLTQLKSVNDWLDGIGSSKEEEEEEEEILGVSSETV DRLRKKIYEYLLTHVESAAAALGGGNGGGGGSQSSPRIRTVDIKPKRYLTTKMEYEDKNLIEVLEENVIIDVAKYMSYVSAPHAGAISTFSGTTRDSFDG KTVMELRYEAYVPMAVRQIKSICSTARASWEIHAIAVAHRLGAVPVGETSIFIAVSAVHRADSLDACKFMIDELKATVPIWKKEVYSNGEVWKENSEFIE RRLAPGNTRNDCCKLKVEVGTPSGVKACCRPKVKVIDEDKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08760			Plant protein of unknown funct...		Lus10036076 [exp]	0	1
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10037458 [exp]	36.3	0.7291
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10005767 [exp]	68.3	0.7075
AT1G18210			Calcium-binding EF-hand family...		Lus10042008 [exp]	83.4	0.6726

Compare expression of checked genes

Lus10036076 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.