Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24420 179 / 4e-51 HXXXD-type acyl-transferase family protein (.1) AT3G26040 174 / 6e-49 HXXXD-type acyl-transferase family protein (.1) AT5G47950 160 / 3e-44 HXXXD-type acyl-transferase family protein (.1) AT4G15390 159 / 1e-43 HXXXD-type acyl-transferase family protein (.1) AT3G30280 155 / 4e-42 HXXXD-type acyl-transferase family protein (.1) AT1G24430 133 / 3e-34 HXXXD-type acyl-transferase family protein (.1) AT5G47980 124 / 6e-31 HXXXD-type acyl-transferase family protein (.1) AT4G15400 122 / 2e-30 HXXXD-type acyl-transferase family protein (.1) AT5G23970 114 / 2e-27 HXXXD-type acyl-transferase family protein (.1) AT5G41040 89 / 6e-19 HXXXD-type acyl-transferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036126 [exp] 715 / 0 AT3G26040 189 / 6e-55 HXXXD-type acyl-transferase family protein (.1) Lus10034600 [exp] 552 / 0 AT3G30280 145 / 6e-39 HXXXD-type acyl-transferase family protein (.1) Lus10001107 [exp] 401 / 1e-136 AT3G26040 193 / 2e-56 HXXXD-type acyl-transferase family protein (.1) Lus10004441 [exp] 306 / 9e-100 AT3G26040 196 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10000319 [exp] 302 / 7e-98 AT3G26040 198 / 2e-58 HXXXD-type acyl-transferase family protein (.1) Lus10012759 [exp] 278 / 2e-88 AT3G26040 209 / 3e-62 HXXXD-type acyl-transferase family protein (.1) Lus10042994 [exp] 258 / 3e-81 AT3G26040 184 / 3e-53 HXXXD-type acyl-transferase family protein (.1) Lus10002893 [exp] 257 / 1e-80 AT5G47950 195 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10016353 [exp] 252 / 2e-78 AT3G26040 201 / 1e-59 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G124156 [exp] 244 / 2e-75 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 240 / 5e-74 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 239 / 7e-74 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 239 / 7e-74 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G033500 [exp] 233 / 4e-71 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.011G124500 [exp] 232 / 5e-71 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124268 [exp] 232 / 5e-71 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.008G034100 [exp] 223 / 1e-67 AT3G26040 270 / 4e-86 HXXXD-type acyl-transferase family protein (.1) Potri.008G034300 [exp] 223 / 2e-67 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G034200 [exp] 211 / 6e-63 AT3G26040 254 / 9e-80 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10036077 pacid=23141244 polypeptide=Lus10036077 locus=Lus10036077.g ID=Lus10036077.BGIv1.0 annot-version=v1.0 ATGGAAGCGGAAGGACGTGATAGAATGGGAGTGGAAGTGATATCAGTGGAGAAGATAAAGCCAACTTTAATTATAAGAGGAGGAGAGAAAGTTGATCAAG GCTTCAACCTCTGCCTTATTGATCAGCTAATGATGCGAAGTTATTTCGGGATCGTCATCTTCTATCCTCCGCCACCACCGTCTGCAACTTTTAACAACAA CAACCTTGGCAAGCAGCTGAAAGCCACACTCTCCACCGCACTCAACACCTTCTACCCATTATCCGGAAGGGTCAAGGGAAATCTGACCGTTGATGACTTC CAAGCTGGGGTGCCCTTCACTGAAACTCGAGTTAAGGGGTACAATAGTCTTTCCGACTTTCTCAAATCCCCTGATTTGGAATTCCTCAACCATTTGTCTC CCGTCGAGACCTTCGCCCTCACTACAACCTACGATGAGCCACAACCCCCGCCACTTGTAGTCAAACTCAACCTCTTTCCTTGTGGCGGCGTTGCTCTTGG CCTCGGTTTCAACCACAAGCTCGTCGACGGTGCTACTGCCGACGCATTCCTCAACACCTGGGCCAATGCTCGTCATGATCATCACGGTCTTCATCTAATC TCCTCTAAAGCGTCCTCTGTTTTCCCTCCCAGACAATCAATTCCTGCCCAACTCGCATACGTAGCTGACGAGTCTTACCACCGGAATCGTAAAACCAGCA CCAAGAGGTTTGTGTTCGATTCGAATTCCATAGCTGCGTTGAAATCCAGCGGTACAAGTAGCCAGATTCAGAACCCTAGCAGAACAGAAGCAGTATTAGC ATTCATTTGGAAATCCATCATGGCGGCCTCAGCTCCAACCCCGACTCTCTCCCCCCAGCTTCTCGTCCTAGGAGTTAATCTACGATCTCGAATGAAGAAG CTATCGTCGTCATCGAACGACAAGCACTCCTTCTCCTTTGGAAATCTTGTGTCCATGGCAGGGGCATTATCGCCTGATGATGCAGCAGATCGTGAGATGG ATCACCTACTTCAACTTATCCGGACAGGTATTGTAAGTATGGATGAAAACTACCTGAATTTCATATCCTCGTCTACAGAAGAAGCGTTCCAAGCAATGAT GGAAGGGCTAGAGAAGTTTAGAGAATTAGGATCGCAACTTTTAACAACGTCGAGCTGGATCAGGTTTTGCTTTAGTGATGCCGACTTTGGGTTTGGAAAA CCAGTCTGGACCGGTGTGCTTGGAGAAGCCACCGCACATCATCCTACTTACAATAACTTGGTCATTCTCACCGAACTATTAACTGATCCCAACAAAGCTG AGCATTCAACTGCTGTTCGTGGAATAGAGGCGTGGATCAGGCTTGATGTCCAGGTGATGAATCTTCTTGAGCAGAATTCCAACTTTCTTCAATTTGCTTC CCTCAATCCTCCTGTACTTTTCTGA
AA sequence Show only first row Show all	>Lus10036077 pacid=23141244 polypeptide=Lus10036077 locus=Lus10036077.g ID=Lus10036077.BGIv1.0 annot-version=v1.0 MEAEGRDRMGVEVISVEKIKPTLIIRGGEKVDQGFNLCLIDQLMMRSYFGIVIFYPPPPPSATFNNNNLGKQLKATLSTALNTFYPLSGRVKGNLTVDDF QAGVPFTETRVKGYNSLSDFLKSPDLEFLNHLSPVETFALTTTYDEPQPPPLVVKLNLFPCGGVALGLGFNHKLVDGATADAFLNTWANARHDHHGLHLI SSKASSVFPPRQSIPAQLAYVADESYHRNRKTSTKRFVFDSNSIAALKSSGTSSQIQNPSRTEAVLAFIWKSIMAASAPTPTLSPQLLVLGVNLRSRMKK LSSSSNDKHSFSFGNLVSMAGALSPDDAADREMDHLLQLIRTGIVSMDENYLNFISSSTEEAFQAMMEGLEKFRELGSQLLTTSSWIRFCFSDADFGFGK PVWTGVLGEATAHHPTYNNLVILTELLTDPNKAEHSTAVRGIEAWIRLDVQVMNLLEQNSNFLQFASLNPPVLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24420			HXXXD-type acyl-transferase fa...		Lus10036077 [exp]	0	1
AT3G56380		ARR17	response regulator 17 (.1)		Lus10029027 [exp]	1.4	0.8083
AT2G47485			unknown protein		Lus10009157 [exp]	1.4	0.8280
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036126 [exp]	12.2	0.7516
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10036079 [exp]	14.1	0.7553
AT4G37710			VQ motif-containing protein (....		Lus10019270 [exp]	16.1	0.7445
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10026237 [exp]	22.6	0.7431
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Lus10025923 [exp]	24.7	0.7858
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10031674 [exp]	25.0	0.7570
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036078 [exp]	26.5	0.7439
AT4G15733		SCRL11	SCR-like 11 (.1)		Lus10042791 [exp]	27.9	0.7339

Compare expression of checked genes

Lus10036077 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.