Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 176 / 7e-50 HXXXD-type acyl-transferase family protein (.1) AT1G24420 147 / 2e-39 HXXXD-type acyl-transferase family protein (.1) AT5G47950 139 / 4e-36 HXXXD-type acyl-transferase family protein (.1) AT1G24430 139 / 4e-36 HXXXD-type acyl-transferase family protein (.1) AT3G30280 135 / 9e-35 HXXXD-type acyl-transferase family protein (.1) AT5G47980 132 / 1e-33 HXXXD-type acyl-transferase family protein (.1) AT4G15390 131 / 2e-33 HXXXD-type acyl-transferase family protein (.1) AT4G15400 114 / 1e-27 HXXXD-type acyl-transferase family protein (.1) AT5G23970 104 / 4e-24 HXXXD-type acyl-transferase family protein (.1) AT5G41040 69 / 3e-12 HXXXD-type acyl-transferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040354 [exp] 550 / 0 AT3G26040 224 / 1e-67 HXXXD-type acyl-transferase family protein (.1) Lus10014695 [exp] 341 / 2e-112 AT3G26040 221 / 2e-66 HXXXD-type acyl-transferase family protein (.1) Lus10026237 [exp] 338 / 5e-111 AT3G26040 214 / 6e-64 HXXXD-type acyl-transferase family protein (.1) Lus10042433 [exp] 325 / 6e-107 AT3G26040 249 / 8e-78 HXXXD-type acyl-transferase family protein (.1) Lus10026236 [exp] 318 / 3e-102 AT3G26040 210 / 1e-61 HXXXD-type acyl-transferase family protein (.1) Lus10040351 [exp] 266 / 4e-87 AT1G24430 79 / 4e-17 HXXXD-type acyl-transferase family protein (.1) Lus10042432 [exp] 211 / 1e-64 AT5G47950 103 / 4e-25 HXXXD-type acyl-transferase family protein (.1) Lus10040352 [exp] 195 / 6e-61 AT4G15400 71 / 3e-15 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 165 / 1e-45 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G010700 [exp] 183 / 3e-52 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1) Potri.005G250500 [exp] 180 / 3e-51 AT3G26040 304 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Potri.011G124156 [exp] 171 / 9e-48 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 170 / 1e-47 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 170 / 2e-47 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 170 / 2e-47 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.010G056300 [exp] 165 / 1e-45 AT3G26040 347 / 4e-116 HXXXD-type acyl-transferase family protein (.1) Potri.010G056400 [exp] 163 / 6e-45 AT3G26040 354 / 5e-119 HXXXD-type acyl-transferase family protein (.1) Potri.011G124500 [exp] 160 / 6e-44 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124268 [exp] 160 / 6e-44 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10036078 pacid=23141189 polypeptide=Lus10036078 locus=Lus10036078.g ID=Lus10036078.BGIv1.0 annot-version=v1.0 ATGGCTTCAAGTGGTAACCATCATCAGCTTGAAGTGAAGGTGAGATCGAAATCAATCATAAAACCGTCTTCCAAAACTCCCCAAAACCTACGACACTTCA AGCTATCTCTTCTTGACCGCTTGGTTCCTCCATCTCTCTACATCAACTCCGTCTCCTTCTACCCCAAACCCGCTATTGATCAAGTCTCAACCCTACTCCG AGATTCCCTCTCTGACACCCTCTCTCATTTCTACCCACTTGCCGGCAGGATCCGAGTCAATAATAATGACGACTCGTCACCGGTGATAGACTGTGATGAC AGTGGAGTTGTCTACATGGAAGCTGAAGTAGACCAACTCATGTCTCAATTTCTCTGCGGTGGGTCCGGTACTGGTACTGGTACCGGTATCGGCGCCCCAC CGGGTAAACAAGTGCTTGGTCGTTTGGCTCCTCGGCGCCCCAAATTCGATGATGCTAGTAGTGATGATGATATTCCTCTTGCAAGCTTCCAGACCACTGT GTTCCGGTGTGGTGGGGTCGCTATAGGAGTTTCCTTAAGCCATGTTGTTGCAGACGGTCAAATCTTTGGTATGTTCCTCCAAAAATGGGCTGCCAATAGA AAACGTTATAATCAGATGGATGCTTACGCTCACGACATGGCCGCCTCTCTGTTCGAGAGCAACGACCATGTTTTCAATCTTATAATGTCGTCTTTCATGC AACGTGTGGAGAAAGCCGAAAAACAGTGTACTACTAGTACTGTCGTTGCTGAGAGGTTCGTTTTTAGTGGAGAGGCAATATCTGCGCTAAAGTCAAAAGT CAAAAGCAGTCAAGTCCCCAACCCGAGTCGGACATTGGCAATACAAGGGCTCATCTGGAGGGTTGCAATGAGATCAGCTGCCTCGTCCTCGTCCTCGTCC TCTATTGCAATGTCGCTAGTCGATTTACGACCGAGAATGAACATATCTCTGCCTGACTACTCTGTGGGGAACCTCTGTTGGGCCACGGTGGCACGTTATG ACCACCACCACCACCACGACAGCAAAGCATCTGATCCAACAGCGTCTTCGTCTTCGTTGGTTCAGCTGTTGAAGAAGTCAATAGAGAAAGTAGATGGAGA CTTCTTTGAGAAACTCAGAGGCGAGGAAGGTGGTGATGTGATAGGGAAGTGGGTGGAAGAGAAGGGAAACTTGAGAGATTACAACTTTTCGAGTATGGTG CGGATCGGGTTGAATGAGGTTGATTTCGGGTTTGGGAAGCCTCTATGGGTTGGGTTTCTAGGGATAACAGAGGAACCACTTGCAGATACTGTTTTCCTGA TTGAAGCCACGCCTGATGATGATCATGCTGTAGAAGCATGGGTGAGCTTGGATCAAAAGGAGATGGCCGTGTTTCACCAGGATGTTGAGCTGCTTCAGTA CGCAATTGTTAATCCACCAATCAATCTACCCAAAATCTGA
AA sequence Show only first row Show all	>Lus10036078 pacid=23141189 polypeptide=Lus10036078 locus=Lus10036078.g ID=Lus10036078.BGIv1.0 annot-version=v1.0 MASSGNHHQLEVKVRSKSIIKPSSKTPQNLRHFKLSLLDRLVPPSLYINSVSFYPKPAIDQVSTLLRDSLSDTLSHFYPLAGRIRVNNNDDSSPVIDCDD SGVVYMEAEVDQLMSQFLCGGSGTGTGTGIGAPPGKQVLGRLAPRRPKFDDASSDDDIPLASFQTTVFRCGGVAIGVSLSHVVADGQIFGMFLQKWAANR KRYNQMDAYAHDMAASLFESNDHVFNLIMSSFMQRVEKAEKQCTTSTVVAERFVFSGEAISALKSKVKSSQVPNPSRTLAIQGLIWRVAMRSAASSSSSS SIAMSLVDLRPRMNISLPDYSVGNLCWATVARYDHHHHHDSKASDPTASSSSLVQLLKKSIEKVDGDFFEKLRGEEGGDVIGKWVEEKGNLRDYNFSSMV RIGLNEVDFGFGKPLWVGFLGITEEPLADTVFLIEATPDDDHAVEAWVSLDQKEMAVFHQDVELLQYAIVNPPINLPKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036078 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10026237 [exp]	1.0	0.9405
AT5G25120		CYP71B11	"ytochrome p450, family 71, su...		Lus10013194 [exp]	2.0	0.9309
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10036079 [exp]	2.2	0.8732
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036126 [exp]	2.8	0.8930
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10001110 [exp]	3.0	0.9074
AT1G22590	MADS	AGL87	AGAMOUS-like 87 (.1.2)		Lus10028653 [exp]	3.5	0.8443
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10025922 [exp]	4.6	0.8391
AT3G14820			GDSL-like Lipase/Acylhydrolase...		Lus10028424 [exp]	4.9	0.8378
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10014605 [exp]	8.8	0.7897
AT5G62420			NAD(P)-linked oxidoreductase s...		Lus10031739 [exp]	13.4	0.8347

Compare expression of checked genes

Lus10036078 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.