Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45550 473 / 8e-164 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT1G33720 470 / 2e-162 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT2G45560 449 / 3e-154 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT2G45570 434 / 2e-148 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT3G61040 431 / 2e-147 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT2G45580 412 / 6e-140 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT1G33730 352 / 4e-118 CYP76C5 "cytochrome P450, family 76, subfamily C, polypeptide 5", cytochrome P450, family 76, subfamily C, polypeptide 5 (.1) AT4G12300 347 / 4e-114 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT4G12320 339 / 3e-111 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT3G52970 330 / 1e-107 CYP76G1 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028897 [exp] 712 / 0 AT2G45550 473 / 2e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008918 [exp] 697 / 0 AT2G45550 483 / 1e-167 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008936 [exp] 687 / 0 AT2G45550 499 / 6e-174 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028881 [exp] 670 / 0 AT2G45550 477 / 4e-165 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028852 [exp] 665 / 0 AT2G45550 471 / 7e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008938 [exp] 654 / 0 AT2G45550 457 / 2e-157 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028898 [exp] 650 / 0 AT2G45550 488 / 1e-169 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008917 [exp] 649 / 0 AT2G45550 479 / 8e-166 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008935 [exp] 649 / 0 AT2G45550 476 / 5e-165 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G113900 [exp] 625 / 0 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.003G118200 [exp] 573 / 0 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150100 [exp] 451 / 2e-155 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150200 [exp] 438 / 5e-150 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150500 [exp] 434 / 1e-148 AT2G45550 497 / 5e-173 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150300 [exp] 432 / 9e-148 AT2G45550 503 / 2e-175 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150400 [exp] 429 / 7e-147 AT2G45550 495 / 2e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.006G094700 [exp] 363 / 6e-121 AT3G52970 459 / 4e-158 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.001G118500 [exp] 358 / 8e-119 AT4G12320 627 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.012G137200 [exp] 358 / 1e-118 AT2G45550 374 / 1e-124 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10036079 pacid=23141057 polypeptide=Lus10036079 locus=Lus10036079.g ID=Lus10036079.BGIv1.0 annot-version=v1.0 ATGGAAGTGCTGCTAAGCTCCTTAGCATGCCTCATTGCTGCCTTTGTCATCTTCCGTTACCTCGCAAGAAAAGCCACCCAATCTAAACTCCCACCCGGCC CGACCCGGCTTCCAATCATAGGCAACCTCCACAACATAGGCGATAAGCCCCACAAATCACTGGCCCATCTTGCCTCGATTCACGGCCCACTGATGAGTCT GAAACTCGGCCAAGTCACCACAATCATTGCTTCTTCGCCTACTGTAGCCAGAGAAATCCTCCACAAACACGACCAGCTCCTCTCCAACCGGCACATGTTC CTCTCGGTCCGAGCCCACGACCATCATGAATTTGGCATGCCGTGGCTCCCCGTGGGGCCCAAGTGGAGGAACCTCAGGAAAGTGTGCAACACGTATCTGT TCACTTCCCAAAAGCTGAACTCGAACCAGGAGCTTAGGAGGAAGAAGATCCTGGCCTTGGTCGAAGGCGTCGGAAGAAATGCATGTGAAGGGAAGGCGGT GGATATAGGGAGGGTGGGGTTTATGACGACATTCAGCGCCATTTCCACGACCGTGCTCTCGTTTGATCTCACGAACGAGAGCTCAAAGGAAGTCGTGGAG TTTGTCGAGGTTGTAAGGAGCACTATGGAGGAATCTGGGAAGCCTAACTTGGGAGACTTTTTCTCCTTTATGGGCGCGATGGATCTGCAGGGGATACAGA GGAGGATGAAGAGTAATTTCGGGAAGGTATTGAATCTGTTTGGTAAAAAGATTGATGAACGATTGCAGGAACGCAAGTTAGAAACGTACGTATCTGGTAA TGACATGCTCGATACCCTACTGGACATTGTTAGCCAAGATGGTCACGAAGCTTTCATGGATCTAGATCACATCAAACACTTGTTCTTGGATCTATTCATT GCTGGAACGGACACAACTTCAAGCACATTAGAATGGGCAATGGCGGAGTTGCTCAATAATCCTAAGACATTGGCTAAAGCAAGGGAGGAAATAGACCAAA CCATAGGAAGAAACAATCATCTTCAAGAGTCTGATATCGTCCGGTTACCTTATTTGCAAGCAATAGTCAAAGAGACGTTCAGATTACACCCGGCAGCTCC GATGCTACTTCCCCGCACGGCAGGGGCCAATGTTGAAATATATGGCTTCACTGTGCCTAAAGGAGCACAGATCTTCATCAATGCATGGGCTATAGGCCGA GATCCAGCCACGTGGGACAATCCAAACTCGTTCATGCCTGAAAGATTTGTGGGTTCTGAAATTGACGTAAGGGGGAACGGTTGTGAGTTGATTCCTTTTG GAGGTGGAAGAAGGATTTGCCCTGGATTACCATTAGCAATGAGGATGTTATATATGATGTTGGGTTCGTTGATTCATTGGTTTGACTGGAAGATTGCAGA ATCAGAGAGTTTTGATATGGAAGAGAAGGTTGGAATGGGTGGTTTACAGAAAGCTAAACCTTTAGTTGCTATCCCCATCGCTAGATAG
AA sequence Show only first row Show all	>Lus10036079 pacid=23141057 polypeptide=Lus10036079 locus=Lus10036079.g ID=Lus10036079.BGIv1.0 annot-version=v1.0 MEVLLSSLACLIAAFVIFRYLARKATQSKLPPGPTRLPIIGNLHNIGDKPHKSLAHLASIHGPLMSLKLGQVTTIIASSPTVAREILHKHDQLLSNRHMF LSVRAHDHHEFGMPWLPVGPKWRNLRKVCNTYLFTSQKLNSNQELRRKKILALVEGVGRNACEGKAVDIGRVGFMTTFSAISTTVLSFDLTNESSKEVVE FVEVVRSTMEESGKPNLGDFFSFMGAMDLQGIQRRMKSNFGKVLNLFGKKIDERLQERKLETYVSGNDMLDTLLDIVSQDGHEAFMDLDHIKHLFLDLFI AGTDTTSSTLEWAMAELLNNPKTLAKAREEIDQTIGRNNHLQESDIVRLPYLQAIVKETFRLHPAAPMLLPRTAGANVEIYGFTVPKGAQIFINAWAIGR DPATWDNPNSFMPERFVGSEIDVRGNGCELIPFGGGRRICPGLPLAMRMLYMMLGSLIHWFDWKIAESESFDMEEKVGMGGLQKAKPLVAIPIAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10036079 [exp]	0	1
AT3G14820			GDSL-like Lipase/Acylhydrolase...		Lus10028424 [exp]	1.4	0.8699
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036078 [exp]	2.2	0.8732
AT2G47485			unknown protein		Lus10009157 [exp]	2.4	0.8390
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10001110 [exp]	4.5	0.8597
AT5G25120		CYP71B11	"ytochrome p450, family 71, su...		Lus10013194 [exp]	5.5	0.8579
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10026236 [exp]	6.7	0.7811
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10001109 [exp]	7.7	0.8674
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10026237 [exp]	9.9	0.8299
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036126 [exp]	13.7	0.7758
AT1G24420			HXXXD-type acyl-transferase fa...		Lus10036077 [exp]	14.1	0.7553

Compare expression of checked genes

Lus10036079 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.