Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19485 638 / 0 transferases;nucleotidyltransferases (.1) AT2G34970 87 / 5e-18 Trimeric LpxA-like enzyme (.1) AT4G18300 62 / 3e-10 Trimeric LpxA-like enzyme (.1) AT3G02270 54 / 2e-07 Trimeric LpxA-like enzyme (.1) AT3G55590 49 / 3e-06 Glucose-1-phosphate adenylyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026802 [exp] 907 / 0 AT5G19485 633 / 0.0 transferases;nucleotidyltransferases (.1) Lus10018991 [exp] 66 / 5e-11 AT2G34970 869 / 0.0 Trimeric LpxA-like enzyme (.1) Lus10033841 [exp] 65 / 6e-11 AT2G34970 880 / 0.0 Trimeric LpxA-like enzyme (.1) Lus10004699 [exp] 47 / 1e-05 AT2G39770 678 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10040265 [exp] 47 / 1e-05 AT2G39770 678 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10024356 [exp] 45 / 0.0001 AT2G39770 666 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G066400 [exp] 738 / 0 AT5G19485 655 / 0.0 transferases;nucleotidyltransferases (.1) Potri.001G271800 [exp] 718 / 0 AT5G19485 630 / 0.0 transferases;nucleotidyltransferases (.1) Potri.005G045200 [exp] 70 / 1e-12 AT2G34970 969 / 0.0 Trimeric LpxA-like enzyme (.1) Potri.006G090300 [exp] 46 / 4e-05 AT2G39770 669 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.010G198800 [exp] 45 / 6e-05 AT2G39770 685 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.008G060100 [exp] 45 / 7e-05 AT2G39770 648 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF00483 [flax] [poplar] NTP_transferase Nucleotidyl transferase
Representative CDS sequence Show only first row Show all	>Lus10036081 pacid=23141271 polypeptide=Lus10036081 locus=Lus10036081.g ID=Lus10036081.BGIv1.0 annot-version=v1.0 ATGGATTTTCAAGTTGTGGTACTAGCCGGCGGCACTTCAAAAGAGCTGCTTCCTCTCGTCTCCGAGGAACTGCCTAAAGCTTTGCTTCCTGTTGCTAACC GCCCTGTTCTCTCTTACGTTTTGGACCAATTGGAACTCTGCAACCTTAAGGATCTCATTGTGGTTGTTGAAGGTGAAGATGCAGGTCTTCGTGTTAGTGC GTGGATTTCAGCAACTTATGTTGATCGCCATATTGAGGTTGCTGCTGTTCCTGAGGACGTTGGAACTGCTGGCGCTCTTCGTGCCATTGCACACCACTTG ACTGCAAAGGATATTCTGGTTCTGAGTGGTGATCTCGTCTCTGATGTTCCTCTTGGTGTTGTTGCAGCTGCCCATAGAAGACATGATGCTTTGTTAACCA CATTGCTCTGCTCTACTCCGATCAGTGGGCCTGCAGAATCTGGATCCACTGGTGCGAAGGACAAGATCAAGAAACCTAAGCGCTACAACCTCATTGGACT GGACTCAACAAAGCAATTTTTGTTGTACATAGCCACAGGAGCAGAAGTTGAAAAGGACATCCGCGTCTACAAGAGTATTCTTCGTTCGGTTGGTCAGATA GATATTCGAGCTGATCTTATGGATGCTCATCTGTATGCATTCAAGAGGGCTGCTCTGCTGGATGTCTTAGAACGGAAGGAAGAGTTCCGAAGCTTACGAC AGGATGTCCTACCTTATCTTGTTCGGACTCAATTGAAATCAGATATATTGCTAAATGGTTCTCCACAATCAGAAGAAAATGGAGATGAGGTCACCAATTC TCAGAGCAACCACAAAATAGTAGCTCAAATATTATCCAATGCATCTACACCAGGTTTTCATGAAGTATATGAGTCGCGCCATAATGGATCTGCTCCAGTT CAAAGAACCCATAAATGCTGTGCCTATGTTGCCAGTAACAGCACATATTGTGCACGCTTAAATTCTATTCAAGCATTCTGCGATATTAACCGCGATGTCA TTGGTGAAGCAAATCATCTCTCTGGATATACCTTTTCTGCTCATAACAATGTCATACATCCTGCAGCGCAACTCGGATCAAAGACTACTGTGGGGCCACA TTGTATATTGGGGGAAGGATCAGAAATGGGTGACAAATGCAGTGTGAAGCGCTCTGTTATTGGCCGTCATTGCCGGATAGGTTCCAATGTTAAGATTGTT AATTCAGTTGTGATGGACCATGCTACCATTGGAGATGGCTGTTCAATCCAAGGTTCTGTAGTCTCGAGCAATGTCCAGATCCAGGAGCGAGTTGTGCTGA AAGACTGTCAGGTTGGAGCTGGCTTTGTGGTTATTTCTGGCAGCGAGTACAAAGGAGAATCATTAGCAAGGAAATAA
AA sequence Show only first row Show all	>Lus10036081 pacid=23141271 polypeptide=Lus10036081 locus=Lus10036081.g ID=Lus10036081.BGIv1.0 annot-version=v1.0 MDFQVVVLAGGTSKELLPLVSEELPKALLPVANRPVLSYVLDQLELCNLKDLIVVVEGEDAGLRVSAWISATYVDRHIEVAAVPEDVGTAGALRAIAHHL TAKDILVLSGDLVSDVPLGVVAAAHRRHDALLTTLLCSTPISGPAESGSTGAKDKIKKPKRYNLIGLDSTKQFLLYIATGAEVEKDIRVYKSILRSVGQI DIRADLMDAHLYAFKRAALLDVLERKEEFRSLRQDVLPYLVRTQLKSDILLNGSPQSEENGDEVTNSQSNHKIVAQILSNASTPGFHEVYESRHNGSAPV QRTHKCCAYVASNSTYCARLNSIQAFCDINRDVIGEANHLSGYTFSAHNNVIHPAAQLGSKTTVGPHCILGEGSEMGDKCSVKRSVIGRHCRIGSNVKIV NSVVMDHATIGDGCSIQGSVVSSNVQIQERVVLKDCQVGAGFVVISGSEYKGESLARK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19485			transferases;nucleotidyltransf...		Lus10036081 [exp]	0	1
AT5G17270			Protein prenylyltransferase su...		Lus10030019 [exp]	12.9	0.7700
AT1G07910		ATRNL, RNL, AtR...	ARABIDOPSIS THALIANA RNA LIGAS...		Lus10017071 [exp]	38.1	0.7101
AT1G53390		ABCG24	ATP-binding cassette G24, P-lo...		Lus10038714 [exp]	47.8	0.7175
AT1G04900			Protein of unknown function (D...		Lus10016677 [exp]	57.2	0.6518
AT4G27640			ARM repeat superfamily protein...		Lus10034202 [exp]	64.2	0.7070
AT3G04160			unknown protein		Lus10021983 [exp]	66.6	0.7003
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10023621 [exp]	74.5	0.6584
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Lus10014242 [exp]	105.5	0.6413
AT1G74600		OTP87	organelle transcript processin...		Lus10024220 [exp]	128.1	0.6398
AT1G66520		PDE194	pigment defective 194, formylt...		Lus10010978 [exp]	137.6	0.6610

Compare expression of checked genes

Lus10036081 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.