Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55290 370 / 1e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G13610 370 / 2e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G12270 343 / 8e-117 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G12900 296 / 8e-99 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10490 182 / 3e-54 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06620 174 / 6e-51 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10500 172 / 2e-50 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 168 / 6e-49 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G24530 164 / 1e-47 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25300 163 / 5e-47 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030185 [exp] 198 / 2e-60 AT4G10490 442 / 3e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10007818 [exp] 194 / 1e-58 AT1G03400 315 / 9e-106 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10015573 [exp] 171 / 3e-50 AT5G24530 510 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10026801 [exp] 175 / 4e-50 AT5G24530 142 / 7e-38 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022196 [exp] 169 / 2e-49 AT5G59530 420 / 5e-147 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032930 [exp] 169 / 3e-49 AT5G24530 504 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021203 [exp] 169 / 3e-49 AT1G06620 416 / 2e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022197 [exp] 167 / 3e-48 AT1G06620 434 / 6e-153 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022415 [exp] 167 / 3e-48 AT1G06620 432 / 6e-152 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G006901 [exp] 404 / 7e-141 AT3G13610 520 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G007100 [exp] 393 / 1e-136 AT1G55290 496 / 4e-177 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G097900 [exp] 317 / 1e-106 AT3G12900 471 / 4e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G006800 [exp] 281 / 1e-93 AT3G13610 371 / 2e-129 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G107500 [exp] 211 / 7e-65 AT1G03400 302 / 3e-100 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150100 [exp] 198 / 2e-60 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451900 [exp] 194 / 8e-59 AT4G10490 498 / 3e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073100 [exp] 188 / 3e-56 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.014G106700 [exp] 184 / 6e-55 AT4G10490 468 / 2e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G006300 [exp] 176 / 4e-52 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10036082 pacid=23140984 polypeptide=Lus10036082 locus=Lus10036082.g ID=Lus10036082.BGIv1.0 annot-version=v1.0 ATGTCTCTCACAACTCCAAGTCCCTCCCAAGTAATCGACTTCGTGATTCACAAAGCCAATGGCTTGAAAGGCTTAGTCAATTCAGGTCTCACAACCATCC CTCCCCAATACATCCAACCCCCTGAAGAACGACTGGAATCCCTCAAAGTCAAGCCTTCATCCTCAATACCCATCATCGATGTCTCAAATTGGGACGACCC GCGAGTTCAAGATTCAATATTTGAAGCTGCGACCCAATTGGGGTTCTTCCAGATTATTAATCACGGTATCCCTAACCAAGTTCTGGGCAAAGTCATCGAT GCAGCGCATGCTTTCTATGGCCTGCCCAATGCGGAGAGACGCCTCTACTGGAAAGGCAATTCCCCTTCTCCAACTGCTTTCTACACCACCAGCTTCAGCC CTTTGGCTGAGAAAGTCCTCGAGTGGAAGGATTTCTTGATGTTTCAGTATGTTTCAGGGGATGAAGATGCATATGCCCTTTGGCCTCCTGCTTGCAAAGA TGAAGTGCTTGATTACATGAAACGAGCCGAACCAGTGGTTAAGAAGTTGGTAGAGCTGCTACTGAAGAAGATGAACGTGGAGGAGGGCTCCATGGACAAA GAAAGAGAGAGATGTTTGATGGGTTCACCAAGAATTAGTCTCAACTACTATCCAAAGTGTCCAAACCCTGAGTTGGCTGCTGGAGTTGGTCGCCATTCTG ACATATCAACCATCACAATCCTTTTACAGGACGATACAGGAGGGCTGTACGTGAAGGGAACCCAAGACGAGTCTTGGATTCCAGTTCCACCAGTTGAAGG AGCGCTTGTGGTCAATGTTGGGGATGTGTTACAGATAATGAGTAATGATCTCTACAAAAGCGTGGAGCACCGTGCATTTCCCAGCAACACTAGGAACAGG GTTTCAGTCCCCATCTTCGTTAATCCAGCTCCAGATGCTGTCATTGGAGTTCTCCCGGAGGTTCTTGAAAGTGGAGAGAACGCCGTTTACAAATCGATTC TGTATTCTGACTACTTCATGCATTTCTTTAGCAAGGGCCACGACGGAAAGAGTACCTTGGATTTTGCCAAGATATGA
AA sequence Show only first row Show all	>Lus10036082 pacid=23140984 polypeptide=Lus10036082 locus=Lus10036082.g ID=Lus10036082.BGIv1.0 annot-version=v1.0 MSLTTPSPSQVIDFVIHKANGLKGLVNSGLTTIPPQYIQPPEERLESLKVKPSSSIPIIDVSNWDDPRVQDSIFEAATQLGFFQIINHGIPNQVLGKVID AAHAFYGLPNAERRLYWKGNSPSPTAFYTTSFSPLAEKVLEWKDFLMFQYVSGDEDAYALWPPACKDEVLDYMKRAEPVVKKLVELLLKKMNVEEGSMDK ERERCLMGSPRISLNYYPKCPNPELAAGVGRHSDISTITILLQDDTGGLYVKGTQDESWIPVPPVEGALVVNVGDVLQIMSNDLYKSVEHRAFPSNTRNR VSVPIFVNPAPDAVIGVLPEVLESGENAVYKSILYSDYFMHFFSKGHDGKSTLDFAKI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55290			2-oxoglutarate (2OG) and Fe(II...		Lus10036082 [exp]	0	1
AT4G01940		ATCNFU1, NFU1	NFU domain protein 1 (.1)		Lus10009999 [exp]	23.6	0.6637
AT5G07670			RNI-like superfamily protein (...		Lus10031741 [exp]	36.4	0.6200
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10005095 [exp]	47.3	0.5778
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Lus10035146 [exp]	80.2	0.5936
AT1G08490		ATSUFS, SUFS, A...	chloroplastic NIFS-like cystei...		Lus10031670 [exp]	130.0	0.5490
AT3G10970			Haloacid dehalogenase-like hyd...		Lus10029053 [exp]	138.1	0.5612
AT3G04870		SPC1, PDE181, Z...	SPONTANEOUS CELL DEATH 1, PIGM...		Lus10009190 [exp]	232.7	0.5463

Compare expression of checked genes

Lus10036082 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.