Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80170 488 / 4e-171 Pectin lyase-like superfamily protein (.1) AT1G70500 326 / 2e-107 Pectin lyase-like superfamily protein (.1) AT1G23460 322 / 6e-106 Pectin lyase-like superfamily protein (.1) AT3G57510 316 / 6e-104 ADPG1 Pectin lyase-like superfamily protein (.1) AT2G41850 312 / 2e-102 ADPG2, PGAZAT ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 2, polygalacturonase abscission zone A. thaliana (.1) AT3G07970 303 / 1e-98 QRT2 QUARTET 2, Pectin lyase-like superfamily protein (.1) AT1G02460 298 / 2e-96 Pectin lyase-like superfamily protein (.1) AT4G01890 296 / 1e-95 Pectin lyase-like superfamily protein (.1) AT1G56710 293 / 5e-95 Pectin lyase-like superfamily protein (.1) AT1G48100 288 / 1e-92 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026798 [exp] 684 / 0 AT1G80170 355 / 5e-120 Pectin lyase-like superfamily protein (.1) Lus10042371 [exp] 329 / 1e-108 AT3G07970 432 / 5e-149 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10019711 [exp] 328 / 3e-108 AT3G07970 461 / 1e-160 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10029511 [exp] 327 / 2e-107 AT3G07970 480 / 1e-167 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10026299 [exp] 321 / 8e-107 AT3G07970 418 / 3e-145 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10030602 [exp] 320 / 1e-104 AT1G23460 624 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10029139 [exp] 312 / 1e-102 AT1G23460 574 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038059 [exp] 295 / 1e-94 AT1G02460 542 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10009994 [exp] 291 / 2e-93 AT1G02460 606 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G171900 [exp] 542 / 0 AT1G80170 506 / 1e-178 Pectin lyase-like superfamily protein (.1) Potri.009G060400 [exp] 337 / 1e-111 AT3G07970 514 / 0.0 QUARTET 2, Pectin lyase-like superfamily protein (.1) Potri.008G211900 [exp] 336 / 2e-111 AT1G23460 638 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G463000 [exp] 336 / 3e-111 AT1G23460 634 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.011G159000 [exp] 331 / 2e-109 AT1G23460 667 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.006G052700 [exp] 330 / 4e-109 AT3G07970 449 / 7e-156 QUARTET 2, Pectin lyase-like superfamily protein (.1) Potri.005G005500 [exp] 317 / 1e-103 AT1G02460 583 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G190600 [exp] 315 / 3e-103 AT1G02460 582 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.016G054800 [exp] 313 / 9e-103 AT2G41850 421 / 7e-145 ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 2, polygalacturonase abscission zone A. thaliana (.1) Potri.014G115700 [exp] 313 / 2e-101 AT1G02460 593 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10036084 pacid=23141236 polypeptide=Lus10036084 locus=Lus10036084.g ID=Lus10036084.BGIv1.0 annot-version=v1.0 ATGAAAAGTTCACAACTTTGCTGCTGTTGTTGGAAGACACCCGCTGTTATCCTTCTTCTCTCGATTGTACTAGGAATTGTTTGCGCAGAAGGATTCGAAT CCGGGCTGGAGCTCCCGCAATCTGGGTCCGCCTCTGCCATTAGAAGATTCAGATCTAAAAGGGTTATTTACATCCATGATTTCGGAGCTTCTGGCGACGG GGTTCAGAATGATACCCAGGCTCTCGAAGATGCTTGGGAGATTGCTTGTTCATTACCAAAAAGAAGTAGAATCGTACTCCCAATTGGTACCTATCTTGTG CACCCTGTTGTTCTCTCAGGGCCTTGCAAATCCAAAATCACTTTCAGTATAGCTGGGACAATTGTTGCACCCCAAGATCCTCAAGCTTGGAGGGGGTTGA ATCATCGTAGGTGGCTCTACTTCGCAAAGGTAAACCACCTCCGATTTGAAGGAGGAACAATCAACGGCATGGGACAACAGTGGTGGGCTAACTCTTGCAA GACCCATAAGAAAAATGTTTCATGTGTGCCCTTTCTACTGCAGGCCCTTACATTCCACAGATGCAAGGATTTGAAAGTTGGGAATCTTAGAGTGGTCGAT AGTCAGCAAATGCACATTGCATTCACCAATTGTGTTCGTGTTTCAGTTACGCAACTTGAAGTGCTAGCACCTGCTTTTAGCCCTAACACTGATGGCGTCC ATATAAGTTCATCTAGTGGTGTCCATGTTATGAATTCCGTTATCAAAACAGGAGATGACTGCATCTCCATTGTAGGTAATTCTTCAAGAATCAATGTAAA AAATGTTGTCTGTGGACCAGGGCATGGAATTAGTATCGGAAGCTTGGGAAAATCAAACTCAACAGATTTTGTGGAAAGTGTATCAGTTGATGGAGCATTC TTGTCCAACACACAGAATGGTTTGCGGATAAAGACATGGCAGGGAGGGAGTGGTAAAGCTAGCGACATCAGCTTCCAGAATGTGCATATGGAAAATGTAT CAAACCCAATTATCATCGATCAATTCTACTGCGATTCCAAATTCCCGTGTGCAAACCAGACTATGGCAGTGAAGGTGGAAGATGTATCTTTCAAACACAT CAAAGGAACTTCAGCAACACCAGAAGCAATAAGATTCTCTTGCAGCGACTACTCCTCGTGCGAGGGGTTATATTTACAAGACGTTCAATTACTGTTAAGC AGCGAAGGAGGAGTCACTGAGTCATTCTGCTGGGAAGCTTATGGCACAAGCGGTGGATCAGTGTTTCCTCCTCCATGTTTCACGTCTGATGAACAGTTCA TCAAGCAGAATATCCCTCACCAAAAAATTTCTTTATTCAATCTCAGGAGGTAA
AA sequence Show only first row Show all	>Lus10036084 pacid=23141236 polypeptide=Lus10036084 locus=Lus10036084.g ID=Lus10036084.BGIv1.0 annot-version=v1.0 MKSSQLCCCCWKTPAVILLLSIVLGIVCAEGFESGLELPQSGSASAIRRFRSKRVIYIHDFGASGDGVQNDTQALEDAWEIACSLPKRSRIVLPIGTYLV HPVVLSGPCKSKITFSIAGTIVAPQDPQAWRGLNHRRWLYFAKVNHLRFEGGTINGMGQQWWANSCKTHKKNVSCVPFLLQALTFHRCKDLKVGNLRVVD SQQMHIAFTNCVRVSVTQLEVLAPAFSPNTDGVHISSSSGVHVMNSVIKTGDDCISIVGNSSRINVKNVVCGPGHGISIGSLGKSNSTDFVESVSVDGAF LSNTQNGLRIKTWQGGSGKASDISFQNVHMENVSNPIIIDQFYCDSKFPCANQTMAVKVEDVSFKHIKGTSATPEAIRFSCSDYSSCEGLYLQDVQLLLS SEGGVTESFCWEAYGTSGGSVFPPPCFTSDEQFIKQNIPHQKISLFNLRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80170			Pectin lyase-like superfamily ...		Lus10036084 [exp]	0	1
AT3G10540			3-phosphoinositide-dependent p...		Lus10028834 [exp]	6.2	0.7777
AT5G50150			Protein of Unknown Function (D...		Lus10027683 [exp]	8.8	0.7577
AT1G20410			Pseudouridine synthase family ...		Lus10005645 [exp]	9.2	0.7486
AT1G77020			DNAJ heat shock N-terminal dom...		Lus10029744 [exp]	10.7	0.7114
AT3G17430			Nucleotide-sugar transporter f...		Lus10018339 [exp]	13.6	0.7045
AT4G17150			alpha/beta-Hydrolases superfam...		Lus10039125 [exp]	14.3	0.7213
AT5G07170			Cell cycle regulated microtubu...		Lus10031109 [exp]	19.3	0.6722
AT1G08660		MGP2	MALE GAMETOPHYTE DEFECTIVE 2 (...		Lus10031992 [exp]	21.0	0.6678
AT1G52630			O-fucosyltransferase family pr...		Lus10036089 [exp]	25.5	0.6710
AT3G10540			3-phosphoinositide-dependent p...		Lus10017448 [exp]	28.2	0.6322

Compare expression of checked genes

Lus10036084 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.