Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80190 249 / 4e-79 PSF1 partner of SLD five 1 (.1) AT5G11280 169 / 2e-48 unknown protein AT1G80200 130 / 3e-34 unknown protein AT5G42905 45 / 0.0001 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026797 [exp] 397 / 2e-135 AT5G11280 121 / 1e-33 unknown protein Lus10025699 [exp] 337 / 5e-112 AT1G80190 283 / 4e-97 partner of SLD five 1 (.1) Lus10035964 [exp] 328 / 1e-108 AT1G80190 275 / 2e-94 partner of SLD five 1 (.1) Lus10002030 [exp] 169 / 4e-48 AT5G11280 323 / 2e-113 unknown protein Lus10002898 [exp] 145 / 4e-40 AT5G11280 281 / 1e-97 unknown protein Lus10032867 [exp] 77 / 4e-16 ND / Lus10040341 [exp] 61 / 3e-09 AT2G39350 452 / 0.0 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10023465 [exp] 61 / 3e-09 AT2G39350 1064 / 0.0 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10034684 [exp] 57 / 3e-09 ND 66 / 9e-13
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G142300 [exp] 299 / 3e-98 AT1G80190 290 / 6e-101 partner of SLD five 1 (.1) Potri.003G061800 [exp] 219 / 1e-63 AT1G15410 387 / 4e-132 aspartate-glutamate racemase family (.1) Potri.006G251600 [exp] 179 / 5e-52 AT5G11280 327 / 6e-115 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05916 [flax] [poplar] Sld5 GINS complex protein
Representative CDS sequence Show only first row Show all	>Lus10036085 pacid=23140966 polypeptide=Lus10036085 locus=Lus10036085.g ID=Lus10036085.BGIv1.0 annot-version=v1.0 ATGACGATGATGTCATGGCTTAGGTTGCTGCAATGCAATTGCTATTCAAAGATTCCTGGAGTGGACGACAAGGTGCATGTGAATCCGCTGCCTACCGAAG GCGGGCTGATGAACATTGGGTGGCAGCCTCCACCTCTTGGTGTGGTGAAGATTAACACGGATGTGGATGTTTTCGCATCTGAGGGGATGGTCTCGGGGTC ATCGCTCTGTGATATGAATGGTTATTTCGTTGCTGCTTACTGTAAGAGAATCCCTGGAGTGTGGTCGCAGGGTTTGGGGGAAGCTATGGCTGTTGAATAT GGTGTTCTTTTCGCAAAGCAACATGTTTTTATTGATGTTATGTTGGAGTGTGACTGTCTTGATCTCACTACTAAGCTGACAGGGGATAGTGAGGATCGAA CTGAGATGGGTTTCTTATGTCGTAGCCTTCATTGTCTTCTCGAGGAATTTCAACATTGGCGATCAGCGCCATTGCTGCATACAGAGAAAAAGCAAATTAG CTTTGTCAATGAAGGAACCCAAATACAGAGGATACACCTCAAGATCGAGCTACAGAGTCCTTGGGAGCCGGAACTCACTTGCAATTGGATTCGTCAGAGC ATCGATCAGAGTCGATTTCCCAGAGCCACTAGTTTCAAGAACAGCCAAAATATCGTCGTCATGTGCTTTTCCGGATATATCATTGAGAAGGATTTCGTCA TCATGAACAAACTCAAGCTCAAGCTCATGTCAGAGAAGGAAGAGATAGCGGAGCAGTTTGTTCATGATTCGGAGGATTTGTTCAACCAAGTCATCGACCA ATGCACCCAACATTACCTAGAGCTTCAAGCTTTGATTAGGAAAATGCAGGAAGAAAACGTGGATGTAACGGAAACCAGAAATGAGGATCACTACGGAGCT CTTGTTCACCATCTCTCTATGACTCGTAACAAGCGTTGCTTAATGGCCTATGTGTATAACCGAGCCGAAGTTATACAAAGTTTGGCATGGAAAGTGGGGT TTGAGCTTCCAGAAGAAATTCAAGAGAAGCTCAGTGACACAGAGAAAAACTATTTTGGGAAGCATTCTGCTGCTCTACAGTCCTATATGGCTGATGTAGA TATTGATTTGAACGTGGACATGGTACCGCCTAAAGATCCTTACATCAAGGTGAGGGTCCTTGATGACATGGGTGAAGGGATAATGCTAAGTGACAAGACT GCCAATCTGGCCCGTCACTCAATGCACTTTCTCAAGAGAACTGACGCTGAGCAATATATTGCTCGGGGGAGCTTCAACTGCATAGCCCCAAAGCATCGCC TTGGTTTGCTCATCTGCCCAAAAACTGCTGTAATGGCTTCTCCAAGGAAATGGGCAGCCATCGTCTCCTTCATTGCTCGCTGCCTTCATTTTCTAATCAT AATCCTCCAAGTCCCTCTTTTCAGGGTGCCATGTACAACAGGGAAATGTTCATCACCCGTAGAACTGACATGCTCTCAGTTGATGGCGACCGAAATCGTC CCTCCCCTTTTGGTGAAGCTTCTTCTTTACCCTGGAGCCGTTGCAAAAGCCTCCATACGCAACAAACAAATACCGAAATTCAGTAAACTCCTCAAACTGT ACAATTTCACCAGTTTGAACAAGGTCTCCTCCCCAGCGGCTGACCTCTACCATCTAGAGATTCTTGCAGGAAGCTACCTCTCAGTGGCAGGGGCAATACT AGGACTGGTGAGGCCTGGGAGGATGAGTTTGTTTGGAGCACTTATGATTGTTTGGGGCTTTGCTAGAGAAGTCATTCTGACAACATCTACTAATAAGAAG GCTTTTTACATGTACCCACAGATGTTCCTCGCCGTGCTTTGTGCTTTCTTGTCCATAAGAAAGGATGTTAGATGGCTTCTCCGGAGTTTCCAAGCTCAAA GAAATGCAAAAGCTGGATCCAAATACTTGTGA
AA sequence Show only first row Show all	>Lus10036085 pacid=23140966 polypeptide=Lus10036085 locus=Lus10036085.g ID=Lus10036085.BGIv1.0 annot-version=v1.0 MTMMSWLRLLQCNCYSKIPGVDDKVHVNPLPTEGGLMNIGWQPPPLGVVKINTDVDVFASEGMVSGSSLCDMNGYFVAAYCKRIPGVWSQGLGEAMAVEY GVLFAKQHVFIDVMLECDCLDLTTKLTGDSEDRTEMGFLCRSLHCLLEEFQHWRSAPLLHTEKKQISFVNEGTQIQRIHLKIELQSPWEPELTCNWIRQS IDQSRFPRATSFKNSQNIVVMCFSGYIIEKDFVIMNKLKLKLMSEKEEIAEQFVHDSEDLFNQVIDQCTQHYLELQALIRKMQEENVDVTETRNEDHYGA LVHHLSMTRNKRCLMAYVYNRAEVIQSLAWKVGFELPEEIQEKLSDTEKNYFGKHSAALQSYMADVDIDLNVDMVPPKDPYIKVRVLDDMGEGIMLSDKT ANLARHSMHFLKRTDAEQYIARGSFNCIAPKHRLGLLICPKTAVMASPRKWAAIVSFIARCLHFLIIILQVPLFRVPCTTGKCSSPVELTCSQLMATEIV PPLLVKLLLYPGAVAKASIRNKQIPKFSKLLKLYNFTSLNKVSSPAADLYHLEILAGSYLSVAGAILGLVRPGRMSLFGALMIVWGFAREVILTTSTNKK AFYMYPQMFLAVLCAFLSIRKDVRWLLRSFQAQRNAKAGSKYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80190		PSF1	partner of SLD five 1 (.1)		Lus10036085 [exp]	0	1
AT4G18470		SNI1	SUPPRESSOR OF NPR1-1, INDUCIBL...		Lus10025429 [exp]	1.7	0.8863
AT4G01270			RING/U-box superfamily protein...		Lus10005126 [exp]	4.2	0.8569
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10003268 [exp]	6.9	0.8633
AT5G17430	AP2_ERF	BBM	BABY BOOM, Integrase-type DNA-...		Lus10001185 [exp]	6.9	0.8188
AT1G48870			Transducin/WD40 repeat-like su...		Lus10033525 [exp]	7.3	0.7876
AT4G10710		SPT16	global transcription factor C ...		Lus10039490 [exp]	9.5	0.8153
AT3G48710			DEK domain-containing chromati...		Lus10016746 [exp]	14.8	0.8291
AT1G20720			RAD3-like DNA-binding helicase...		Lus10016027 [exp]	17.5	0.8318
AT4G37280			MRG family protein (.1)		Lus10011511 [exp]	19.4	0.8057
AT3G57050		CBL	cystathionine beta-lyase (.1.2...		Lus10027313 [exp]	21.9	0.7815

Compare expression of checked genes

Lus10036085 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.