Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21760 417 / 4e-142 HYR1 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) AT3G21790 396 / 8e-134 UDP-Glycosyltransferase superfamily protein (.1) AT3G21780 389 / 4e-131 UGT71B6 UDP-glucosyl transferase 71B6 (.1) AT3G21750 387 / 2e-130 UGT71B1 UDP-glucosyl transferase 71B1 (.1) AT4G15280 376 / 3e-126 UGT71B5 UDP-glucosyl transferase 71B5 (.1) AT3G21800 366 / 2e-122 UGT71B8 UDP-glucosyl transferase 71B8 (.1) AT2G29740 330 / 3e-108 UGT71C2 UDP-glucosyl transferase 71C2 (.1) AT1G07250 329 / 8e-108 UGT71C4 UDP-glucosyl transferase 71C4 (.1) AT4G15260 316 / 2e-104 UDP-Glycosyltransferase superfamily protein (.1) AT1G07260 310 / 2e-100 UGT71C3 UDP-glucosyl transferase 71C3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036088 [exp] 762 / 0 AT3G21760 377 / 3e-126 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10026795 [exp] 459 / 6e-159 AT3G21750 448 / 5e-155 UDP-glucosyl transferase 71B1 (.1) Lus10036087 [exp] 453 / 1e-156 AT3G21790 455 / 3e-157 UDP-Glycosyltransferase superfamily protein (.1) Lus10026793 [exp] 396 / 8e-134 AT3G21780 407 / 4e-138 UDP-glucosyl transferase 71B6 (.1) Lus10039037 [exp] 338 / 2e-111 AT1G07250 378 / 8e-127 UDP-glucosyl transferase 71C4 (.1) Lus10010476 [exp] 316 / 2e-102 AT1G07250 342 / 7e-113 UDP-glucosyl transferase 71C4 (.1) Lus10003805 [exp] 309 / 7e-100 AT1G07250 332 / 5e-109 UDP-glucosyl transferase 71C4 (.1) Lus10039301 [exp] 268 / 6e-84 AT3G16520 481 / 9e-168 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10039302 [exp] 262 / 7e-82 AT3G16520 393 / 2e-133 UDP-glucosyl transferase 88A1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G017100 [exp] 459 / 8e-159 AT3G21750 471 / 1e-163 UDP-glucosyl transferase 71B1 (.1) Potri.016G017232 [exp] 452 / 7e-156 AT3G21760 500 / 7e-175 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G017400 [exp] 446 / 1e-153 AT3G21790 474 / 9e-165 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G017300 [exp] 444 / 5e-153 AT3G21780 477 / 5e-166 UDP-glucosyl transferase 71B6 (.1) Potri.016G016000 [exp] 437 / 2e-150 AT3G21750 456 / 6e-158 UDP-glucosyl transferase 71B1 (.1) Potri.016G016500 [exp] 434 / 7e-149 AT3G21790 479 / 1e-166 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G007000 [exp] 421 / 2e-143 AT3G21760 449 / 5e-155 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.006G007600 [exp] 420 / 2e-143 AT3G21760 448 / 3e-154 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.006G007200 [exp] 416 / 6e-142 AT3G21790 439 / 8e-151 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016100 [exp] 408 / 9e-139 AT3G21790 431 / 1e-147 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10036086 pacid=23141154 polypeptide=Lus10036086 locus=Lus10036086.g ID=Lus10036086.BGIv1.0 annot-version=v1.0 ATGGATACAACGGCGGCAGCTAAACTACACCTAGTGTTCTTACCATCTCCGGGAGCCGGCCACATATTCCCGATGGTGGAGCTCGCCAACCAACTTCTAA ACCGGTATCCCACACTTTCTGTAACAGTTTGCATAATGAAGATGCCTTTCAAGTCCCAATCTTTCGATTTCACTAGCTACCACTCCCACACCGACCGTAT CAAATTCATCGACCTTCACTCACCAACCGTTGACCCAAACACCCCTCCGGCAAAGGCTTTCTCCTACTTCCTCGAAGGTCACGCCCCTCAAATCAAGGAA ATCCTGTCCGAACAAGTGGCGGCCAGCCACGAGTCCCCATCCGCACCGCGTATTGCGGGGGTCGTCCTAGACATGTTCTGTACATCTTTCATGGCCGACG CCAAGGACCTGGGAGTCCCTTCCTATGTTTTCTACACGTGCGGCGCCACGTTTTTGGGTATGATGTTTCAACTCCAAGCTCTTTATGACGAGGGGCTATA CGACCCGGTCAATATGAAGGACTCGGAGACTGAGTTGTTGGAGATTCCGAGTTTGAAAACTCCTCTCCCCGGCAAGCTTCTCCCTTCCGCTGTGGTGCAA CCCGATTGGCTTCCTGCCCTGATGGAACACACAAGAAGGATCAGGGCAGACGCTAAGGGTATTCTGGTCAATACGTTCGAAGATTTCGAATCCTACGCCA TTGCTTCTCTAAATACCGGTCAAAGTCAAACTCCACCCGCTTACCCCGTAGGGCCCATTATGGATTTAAAAGTCAAGGGCGGTGAGAGTACTGCTGCTGA GCACTCGGTGGGACCCATCATGGAGTGGCTTGACCAGCAGCCGGAGTCGTCGGTGGTGTTTCTCTGCTTCGGGAGCATGGGAAGCTTCGATGAGGAACAA ATACAGGAGATAGCCGTAGCTTTGGAAAAGAGTGGACTTCGGTTCTTATGGTCACTTAGGCGTCCGCCGCCCAAATCCGGCACCGGTGTTAAGTTTCCGA CAGATTACGAGGATGTCACGGAAGGGCTACCGGAGGGATTTGTGGAGCGGACAAAAGGGGTGGGGAAGGTAATCGGTTGGGCCCCACAGACGATGATCCT AGCACACCCGTCGACCGGAGGGTTTGTGTCCCACTGCGGGTGGAACTCCACGCTTGAGAGCACGTGGTTCGGTGTCCCGGTGGCCACGTGGCCGATGCAC GCGGAGCAACAGCTGAATGCGGTGTTATTGGTGAGGGAGTTGGAGCTGGCTGAGGAGATAAGGATGAGTTACAGAAAGGAAAGTGGAGAGGTTGTTAAGG CGGAGGAGATTGAGAAAGGGATGATGAGGTTGATGAGTGAGGAGAGTGGTGGTGAGAGAAGGAAGAAAGTGAAGGAGATGAGTGAAAAAAGCAGGAAGAC CATAGTAAACGGTGGAGCTTCTTACTACGCCATTAGTCGCTTTGTTGAAGATGTGTCTAAAAACATCGAGTGA
AA sequence Show only first row Show all	>Lus10036086 pacid=23141154 polypeptide=Lus10036086 locus=Lus10036086.g ID=Lus10036086.BGIv1.0 annot-version=v1.0 MDTTAAAKLHLVFLPSPGAGHIFPMVELANQLLNRYPTLSVTVCIMKMPFKSQSFDFTSYHSHTDRIKFIDLHSPTVDPNTPPAKAFSYFLEGHAPQIKE ILSEQVAASHESPSAPRIAGVVLDMFCTSFMADAKDLGVPSYVFYTCGATFLGMMFQLQALYDEGLYDPVNMKDSETELLEIPSLKTPLPGKLLPSAVVQ PDWLPALMEHTRRIRADAKGILVNTFEDFESYAIASLNTGQSQTPPAYPVGPIMDLKVKGGESTAAEHSVGPIMEWLDQQPESSVVFLCFGSMGSFDEEQ IQEIAVALEKSGLRFLWSLRRPPPKSGTGVKFPTDYEDVTEGLPEGFVERTKGVGKVIGWAPQTMILAHPSTGGFVSHCGWNSTLESTWFGVPVATWPMH AEQQLNAVLLVRELELAEEIRMSYRKESGEVVKAEEIEKGMMRLMSEESGGERRKKVKEMSEKSRKTIVNGGASYYAISRFVEDVSKNIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Lus10036086 [exp]	0	1
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10019832 [exp]	1.0	0.9859
AT1G27450		APRT, ATAPT1, A...	ARABIDOPSIS THALIANA ADENINE P...		Lus10018695 [exp]	2.0	0.9820
AT2G41380			S-adenosyl-L-methionine-depend...		Lus10001155 [exp]	3.5	0.9767
AT1G65820			microsomal glutathione s-trans...		Lus10007375 [exp]	3.7	0.9712
AT4G15093			catalytic LigB subunit of arom...		Lus10034361 [exp]	5.0	0.9764
AT1G72310		ATL3	RING/U-box superfamily protein...		Lus10016427 [exp]	5.9	0.9751
AT5G64250			Aldolase-type TIM barrel famil...		Lus10003271 [exp]	6.3	0.9741
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10031388 [exp]	6.5	0.9782
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040765 [exp]	7.2	0.9713
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10009169 [exp]	7.7	0.9708

Compare expression of checked genes

Lus10036086 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.