Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21760 375 / 2e-125 HYR1 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) AT3G21780 355 / 1e-117 UGT71B6 UDP-glucosyl transferase 71B6 (.1) AT3G21750 354 / 2e-117 UGT71B1 UDP-glucosyl transferase 71B1 (.1) AT3G21790 354 / 3e-117 UDP-Glycosyltransferase superfamily protein (.1) AT4G15280 336 / 2e-110 UGT71B5 UDP-glucosyl transferase 71B5 (.1) AT3G21800 329 / 1e-107 UGT71B8 UDP-glucosyl transferase 71B8 (.1) AT2G29740 313 / 2e-101 UGT71C2 UDP-glucosyl transferase 71C2 (.1) AT4G15260 303 / 2e-99 UDP-Glycosyltransferase superfamily protein (.1) AT1G07250 307 / 4e-99 UGT71C4 UDP-glucosyl transferase 71C4 (.1) AT2G29730 304 / 5e-98 UGT71D1 UDP-glucosyl transferase 71D1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036086 [exp] 763 / 0 AT3G21760 431 / 2e-147 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10036087 [exp] 430 / 3e-147 AT3G21790 455 / 3e-157 UDP-Glycosyltransferase superfamily protein (.1) Lus10026795 [exp] 426 / 1e-145 AT3G21750 448 / 5e-155 UDP-glucosyl transferase 71B1 (.1) Lus10026793 [exp] 392 / 5e-132 AT3G21780 407 / 4e-138 UDP-glucosyl transferase 71B6 (.1) Lus10039037 [exp] 342 / 2e-112 AT1G07250 378 / 8e-127 UDP-glucosyl transferase 71C4 (.1) Lus10010476 [exp] 312 / 6e-101 AT1G07250 342 / 7e-113 UDP-glucosyl transferase 71C4 (.1) Lus10003805 [exp] 309 / 1e-99 AT1G07250 332 / 5e-109 UDP-glucosyl transferase 71C4 (.1) Lus10039301 [exp] 277 / 2e-87 AT3G16520 481 / 9e-168 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10039302 [exp] 268 / 4e-84 AT3G16520 393 / 2e-133 UDP-glucosyl transferase 88A1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G017100 [exp] 430 / 4e-147 AT3G21750 471 / 1e-163 UDP-glucosyl transferase 71B1 (.1) Potri.016G017232 [exp] 429 / 7e-147 AT3G21760 500 / 7e-175 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.006G007000 [exp] 422 / 5e-144 AT3G21760 449 / 5e-155 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016000 [exp] 422 / 6e-144 AT3G21750 456 / 6e-158 UDP-glucosyl transferase 71B1 (.1) Potri.016G017300 [exp] 421 / 2e-143 AT3G21780 477 / 5e-166 UDP-glucosyl transferase 71B6 (.1) Potri.016G017400 [exp] 416 / 1e-141 AT3G21790 474 / 9e-165 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016500 [exp] 416 / 2e-141 AT3G21790 479 / 1e-166 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G007600 [exp] 414 / 1e-140 AT3G21760 448 / 3e-154 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.006G007200 [exp] 392 / 3e-132 AT3G21790 439 / 8e-151 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G017166 [exp] 387 / 8e-132 AT3G21760 426 / 6e-148 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10036088 pacid=23141105 polypeptide=Lus10036088 locus=Lus10036088.g ID=Lus10036088.BGIv1.0 annot-version=v1.0 ATGAGAGAGCAACAATCACTAATCACTACAAACAAACCCACATTCAAACCCAAATATTCAGCCAGTATCGCCGCCGTCATGAATCCAACCCCCGCGGAGG CAGCAGCTACACTGCAGTTAGTATTGGTACCGTCTCCTGGCGCCGGCCACGTTTTCCCGATGGTGGAGCTTGCCAACCAACTCCTAAACCGCTATCCCGC ACTCGCGGTAACAGTTTGCATAATGAAGATGCCTTTCAAATCCACGTCCTTCGATTTCGCTACCTACAAGTCCTCCCATGTAGATCGTATCAAATTCATC GACCTCGACCCACCAACCCTTGACCCAAACACCCCTCCCTCAAAAAGGTTCTCCTCCTTCCTTGAAGGCCACGCCCCACAAGTCAAGAAGATCCTATCCG AACACGTGGCAGCCAGCAACGTGTCCCCATCCGTCGTCCTAGACATGTTCTGTACATCTTTTATGGCCGACGCCAAGGAGCTGGGCGTCCCTTCCTATGT TTTCTACACGTTCAGCGCCACGTTTCTGGGTCTTATGTTCCAACTCCAAGCTCTTTACGACGAGGGACGATTCAACCCGGTTCAGATCAAGGACTCGGAC ACTGAGTTTGTGGAGATTTCGAGTTTGAAAACTCCTATCCCCGGTAATCTTCTCCCTTCCGCGGTAGTGGAACCCGATTTGCTTCTTTCCCTAATAACTC ACACCAGGAGAACAAAGGAATACGCCAGCGGGATTTTGATCAATACATTCCAGGATTTCGAATCCCACGCCATTGCTTCTCTAAACGCCGGTCAAAGTCA AAGTCAAACTCCTCCTCCAATTTACCCTGTGGGACCCATTATGGAATTAAAAGTCAAGGATGCTGATCACTCGGCGGGACCCATAATGGAGTGGCTTGAC CAGCAGCCGGAGTCGTCGGTGGTGTTCCTCTGCTTCGGGAGCATGGGCAGCTTCGATGAGGAACAAGTTAACGAGATAGCCGCAGCTTTGGAAAAGAGCG GGTGTCGCTTCATATGGTCACTTAGGCGGCCGCCGCCCAAATCCGGCGGCGTTAAGTTCCCGACGGATTACGAGGATGTCACAGAAGCGCTGCCGGCAGG GTTTCTGGACCGCACAAGAGGGGTGGGGAAGGTAATCGGTTGGGCCCCGCAGACGATGATCCTAGCACATCCGTCGACTGGAGGGTTTGTGTCGCACTGC GGGTGGAACTCCGTGCTGGAGAGTATGTGGTTCGGTGTTCCGGTGGCCACGTGGCCGATGTACGCGGAGCAACAGCTGAATGCGGTACTATTGGTGAGGG AGTTGGAGATGGCGGAAGAGATAAGGATGAGTTACAGAAAGGAAAGCGGAGAGGTTATTAAGGCGGAGGAGATTGAGAAAGGGATAATGGGATTGATGAG TGAGGAGAGTGGTGGTGAAAGGAGGAAGAAAACGAAGGAGATGAGTGAAAAGAGCAGGAAGACGGTGGAAAATGGTGGAGCTTCTTACCACTCTATTGGT CGCTTTGTCGGAGATGACTAA
AA sequence Show only first row Show all	>Lus10036088 pacid=23141105 polypeptide=Lus10036088 locus=Lus10036088.g ID=Lus10036088.BGIv1.0 annot-version=v1.0 MREQQSLITTNKPTFKPKYSASIAAVMNPTPAEAAATLQLVLVPSPGAGHVFPMVELANQLLNRYPALAVTVCIMKMPFKSTSFDFATYKSSHVDRIKFI DLDPPTLDPNTPPSKRFSSFLEGHAPQVKKILSEHVAASNVSPSVVLDMFCTSFMADAKELGVPSYVFYTFSATFLGLMFQLQALYDEGRFNPVQIKDSD TEFVEISSLKTPIPGNLLPSAVVEPDLLLSLITHTRRTKEYASGILINTFQDFESHAIASLNAGQSQSQTPPPIYPVGPIMELKVKDADHSAGPIMEWLD QQPESSVVFLCFGSMGSFDEEQVNEIAAALEKSGCRFIWSLRRPPPKSGGVKFPTDYEDVTEALPAGFLDRTRGVGKVIGWAPQTMILAHPSTGGFVSHC GWNSVLESMWFGVPVATWPMYAEQQLNAVLLVRELEMAEEIRMSYRKESGEVIKAEEIEKGIMGLMSEESGGERRKKTKEMSEKSRKTVENGGASYHSIG RFVGDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Lus10036088 [exp]	0	1
AT2G26690			Major facilitator superfamily ...		Lus10018553 [exp]	1.7	0.9079
AT2G24580			FAD-dependent oxidoreductase f...		Lus10042437 [exp]	1.7	0.9019
AT5G60790		ABCF1, ATGCN1	ARABIDOPSIS THALIANA GENERAL C...		Lus10028810 [exp]	3.2	0.9076
AT5G58730			pfkB-like carbohydrate kinase ...		Lus10040669 [exp]	3.5	0.8712
AT2G32120		HSP70T-2	heat-shock protein 70T-2 (.1.2...		Lus10021920 [exp]	4.0	0.9016
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10041159 [exp]	4.9	0.8923
AT2G40330		RCAR9, PYL6	regulatory components of ABA r...		Lus10029222 [exp]	5.9	0.8821
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10007948 [exp]	6.3	0.8982
AT1G53920		GLIP5	GDSL-motif lipase 5 (.1)		Lus10013185 [exp]	8.0	0.8819
AT5G63450		CYP94B1	"cytochrome P450, family 94, s...		Lus10014742 [exp]	8.5	0.8732

Compare expression of checked genes

Lus10036088 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.