Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52630 626 / 0 O-fucosyltransferase family protein (.1.2) AT3G02250 218 / 2e-65 O-fucosyltransferase family protein (.1) AT5G15740 205 / 2e-60 RRT1 O-fucosyltransferase family protein (.1) AT1G14020 197 / 2e-57 O-fucosyltransferase family protein (.1) AT5G35570 192 / 8e-55 O-fucosyltransferase family protein (.1) AT2G03280 189 / 1e-54 O-fucosyltransferase family protein (.1.2) AT5G01100 189 / 2e-53 O-fucosyltransferase family protein (.1) AT1G22460 186 / 5e-53 O-fucosyltransferase family protein (.1) AT3G26370 183 / 8e-52 O-fucosyltransferase family protein (.1) AT3G54100 180 / 4e-50 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026792 [exp] 733 / 0 AT1G52630 668 / 0.0 O-fucosyltransferase family protein (.1.2) Lus10007975 [exp] 209 / 4e-62 AT5G15740 772 / 0.0 O-fucosyltransferase family protein (.1) Lus10013503 [exp] 209 / 6e-62 AT5G15740 765 / 0.0 O-fucosyltransferase family protein (.1) Lus10026624 [exp] 203 / 9e-60 AT1G14020 767 / 0.0 O-fucosyltransferase family protein (.1) Lus10030437 [exp] 202 / 2e-59 AT1G14020 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10034651 [exp] 201 / 3e-59 AT5G15740 754 / 0.0 O-fucosyltransferase family protein (.1) Lus10021717 [exp] 202 / 4e-59 AT5G15740 752 / 0.0 O-fucosyltransferase family protein (.1) Lus10019196 [exp] 202 / 4e-59 AT5G15740 541 / 0.0 O-fucosyltransferase family protein (.1) Lus10020943 [exp] 200 / 8e-58 AT1G22460 594 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G062600 [exp] 635 / 0 AT1G52630 667 / 0.0 O-fucosyltransferase family protein (.1.2) Potri.001G171500 [exp] 288 / 1e-96 AT1G52630 302 / 1e-103 O-fucosyltransferase family protein (.1.2) Potri.017G101300 [exp] 219 / 7e-66 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G113500 [exp] 209 / 5e-62 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 203 / 7e-60 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.012G064200 [exp] 201 / 6e-59 AT5G15740 733 / 0.0 O-fucosyltransferase family protein (.1) Potri.015G048100 [exp] 196 / 2e-57 AT5G15740 716 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 196 / 4e-57 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 193 / 7e-56 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.003G077500 [exp] 187 / 3e-53 AT4G16650 785 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10036089 pacid=23141034 polypeptide=Lus10036089 locus=Lus10036089.g ID=Lus10036089.BGIv1.0 annot-version=v1.0 ATGATTGCCGTCTCTGTGAAACCATTGTTCATTACCCTCTTCACTCTCTCCCTCCTCGCCGCCATCATTTTGCTTTCTCCTACGCTCCCCGTAAATCCCA TTCCCCCTGATTTCCCAACGGAGGGGTTGGCTATATGGAACGTTAAAAGAATTGTGGAATGGAGGCCGTGTAAGTGGTGGCTTCAGGGTCATCGTAATGC TCCACCGACAGGCACTAATGGATATATTCGTGTGGATTGCTATGGTGGCCTCAATCAGATGAGAAGAGATTTCTGTGACGGAGTTGGTATTGCCCGCTTG TTGAATGCTACTCTCGTTTTGCCAAAGTTTGAGGCAGCTGCATATTGGAATGAGTCGAGTGGTTTTGCAGATGTATTTGATGTGGATTACTTCATTCAAC AAGTGGCTAGTTTTGTTCGAGTCGTCAAAGAACTGCCACCGGAAATAGCATCAAAAGAGCCGTTCCATGTTGATTGTAGCAAACGCAAAGGGCAATTCGA TTACGTCGAGAATGTCCTCCCACCGTTGTTGGAGCACCGCTTTATTTCAATTACACCAGCAATGAGCCAAAGGAGGGACAGGTATCCTCTTTATGCAAAA TCTGCACTCTGTCAAGCATGTTATAGCGCATTACGTCTAACAAGTTCATTGGAGGAGAAAGCTTTGGAACTCTTGGAAGCTATACCAAAACCATTCCTCT CACTACATCTGCGCTTTGAACCTGACATGGTAGCATACAGCCAATGCGAGTACGAAGGCCTCTCTTCATCTTCCATGGAAGCCATCGAAGCTGTTCGGGG AGATAGAAAACCCTGGACTGGAGAAACGGCTAGTATTTGGAGAAAACGAGGGAAGTGTCCCCTTACTCCTAACGAGACAGCTTTAATCCTGCAAACACTT TCCATCCCTACCAACACACATATATATCTCGCGGCCGGGGATGGTATTATGGAACTGGAAGGGCTAACATCTGTGTATACCAACATATACACAAAATCTG CACTTCTTAACAGCCAGGATTTTACAAACATGCACGGGAACACGAAAGCTGCACTGGATTACTACATTTCGATTACTAGTGATTCGTATGTAGCGACTTA TTTTGGGAACATGGATAAGATGGTTGCTGCAATGAGGGCATATAAAGGTCTGCACAAGACGTTGTTCTTGAGCCGGAAAGTTTTTGCTGAACTGACGTTG AAGGGACTGAAGGGGAAAGAATTGATGGAAGGGTTATGGTCAGCTCATAAAGAAGCTTTTGTGATGGGAAGAGGATCTGCTTTGCCCGACTGCTTTTGCG AATCTAAATTGTGA
AA sequence Show only first row Show all	>Lus10036089 pacid=23141034 polypeptide=Lus10036089 locus=Lus10036089.g ID=Lus10036089.BGIv1.0 annot-version=v1.0 MIAVSVKPLFITLFTLSLLAAIILLSPTLPVNPIPPDFPTEGLAIWNVKRIVEWRPCKWWLQGHRNAPPTGTNGYIRVDCYGGLNQMRRDFCDGVGIARL LNATLVLPKFEAAAYWNESSGFADVFDVDYFIQQVASFVRVVKELPPEIASKEPFHVDCSKRKGQFDYVENVLPPLLEHRFISITPAMSQRRDRYPLYAK SALCQACYSALRLTSSLEEKALELLEAIPKPFLSLHLRFEPDMVAYSQCEYEGLSSSSMEAIEAVRGDRKPWTGETASIWRKRGKCPLTPNETALILQTL SIPTNTHIYLAAGDGIMELEGLTSVYTNIYTKSALLNSQDFTNMHGNTKAALDYYISITSDSYVATYFGNMDKMVAAMRAYKGLHKTLFLSRKVFAELTL KGLKGKELMEGLWSAHKEAFVMGRGSALPDCFCESKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52630			O-fucosyltransferase family pr...		Lus10036089 [exp]	0	1
AT1G08660		MGP2	MALE GAMETOPHYTE DEFECTIVE 2 (...		Lus10031992 [exp]	4.9	0.7226
AT5G04420			Galactose oxidase/kelch repeat...		Lus10017457 [exp]	10.3	0.7707
AT4G28600		NPGR2	no pollen germination related ...		Lus10007743 [exp]	18.3	0.7346
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10023165 [exp]	21.2	0.7677
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Lus10004217 [exp]	22.4	0.7447
AT3G60660			unknown protein		Lus10036493 [exp]	25.3	0.7462
AT1G80170			Pectin lyase-like superfamily ...		Lus10036084 [exp]	25.5	0.6710
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10019391 [exp]	28.4	0.7105
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Lus10038018 [exp]	36.0	0.6559
AT5G38560		AtPERK8	proline-rich extensin-like rec...		Lus10003066 [exp]	38.9	0.6164

Compare expression of checked genes

Lus10036089 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.