Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52620 738 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 295 / 3e-88 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G01110 264 / 5e-77 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G06920 254 / 2e-72 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53700 252 / 2e-72 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G61990 255 / 4e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59900 251 / 6e-71 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 245 / 5e-70 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74580 245 / 6e-70 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65560 247 / 9e-70 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026791 [exp] 1510 / 0 AT1G52620 741 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 299 / 6e-90 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 289 / 3e-85 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 270 / 5e-79 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006373 [exp] 266 / 2e-77 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012068 [exp] 270 / 3e-77 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012328 [exp] 263 / 2e-76 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 263 / 2e-76 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034616 [exp] 261 / 5e-76 AT1G22960 617 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G139200 [exp] 983 / 0 AT1G52620 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 310 / 4e-94 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G105600 [exp] 280 / 9e-83 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 278 / 3e-80 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 267 / 2e-78 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G015900 [exp] 263 / 9e-77 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G013300 [exp] 260 / 3e-75 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G038400 [exp] 256 / 3e-75 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.010G137200 [exp] 261 / 4e-75 AT1G13630 805 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G014100 [exp] 261 / 9e-75 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10036090 pacid=23140977 polypeptide=Lus10036090 locus=Lus10036090.g ID=Lus10036090.BGIv1.0 annot-version=v1.0 ATGTCTAAAACCCTTCTCTCCCGTATCAGACCCCTTAATCACCCAAAACCCATTCGTCCACCTTCTTCTTTTTCTTCTCCAGCTCCATCCACAAGCAACT TCAGAAACGTAGTCTACGATGTTCTGAACATTCTCAGAACTGATCACCAATGGCAAGAATCCCTTGATTCCCTTTTTGTGTCTACCGAAACGGAAGTTTG GGAGATAGCACACTTCGTGTTCGATAAAATTCGCGAACCCGTCCTGGGTTTGAAGTTCTTTGATTGGGCGTCGGAGAAGTCAGGTGCTGATAAGTTTCCT CTTAATGGTTTTGCTTGTTCCTCGCTTTTGAAGCTCCTAGCCCGGTCTTGGGTGTTTGAGGAGGTGGAGAATCTGTTGGAGACTATGAAATGTAAAGGTT TGATCCCTACCCGCGAAGCATTGAGTGTTTCCATCCAAGCATATGCCGAAGCAGGGCTGGTTGACAGGGCTCTTGTACTGTACAATGCTGCACCAGGTGC CTATAATCTCTTCCCTGATACTATTGCTTGCAATTCGATGTTAAATGCGCTAGTAAAATGTAAGAAAATCGACATTGCACGTAGAATCTACGGTGACATG GTGCGGAGAGAAGGTGTTGTGGACAATTATAGCGTAGGCATAATGGTGAGGGGCTTGTGTAAGGAAGGAAAGATTGACGTAGCTAAAAAGTTTATTGAAC GAAGATGGGGGAAGCGATGTGTCCCGAATATTGTGTTCTATAACATGATGATTGATGGCTACTGCAGAAACGGTGATATTAAGAGGGCGGTTAAGCTTTT CAGAGAGTTGAAACTAAAGGGGTTTTTGCCTAACTTGGAGACTTATGGAGCTTTGATTAATGGGCACTCTAAAGGAGGAGACTTTGAGGAAGTTGATAAG CTTTTGGTTGAAATAAAACAGAGGGGCTTGAACGTAAATGTTTGGCTGCATAACATTATCGCAGATGCCAGAATCAAAAGTAATTGTAAGATTAAAGCTC CGGAGACCATCCCTGACATTGTGACGTATAATTCTCTGATCTGCGGTTCATGTAGAGATGGAAAATTGCACGGAGCCGAGGAACTTCTAAAAGAAGCAGT TAAGCGAGGACTTACGCCAAACAGTATTACGTATACTTCTCTGATACATGCGTATAGCAAGCAAGGGAAATTTGTTAAAGCTTCTGACTTGCTCATTGAG ATGACTAAAAATGGTTATATGCCTGATTTGATTGCTTATGGAGCTCTTATTCATGGCCTTGTTTGCTCGGGAGAGGTTGATATTGCTTTGACAGTTAGAG ATGAAATGAGAATAAAGGGAGTTGTCGCTGATGCAAATGTTTACAATGTTCTGCTAAACGGTCTTTGTAAGAAAGGAAGGCTTCCTGCAGCAAAGATTCT TCTTGCGGAAATGCTTGACCAAAATATAGCTCCTGATGCTTTTGTTAATGCCACTCTAGTTGACGGGTTTATCAGAAATGGCAACCTCAGCGAGGCTACA AAAATCTTCGAGCTTACAGCTATCAAGGGAATAGATCCCGGTGTTGTTGGGTATAATGCTATGGTTAAGGGCTTTTGCAAATTTGGATTGATAAATGATG CAATGTTGTTTTTGAAAAAAATGGTAAGCAATGGCCATGTTCCAGATGAGTTCACTTATTCGACTGTGATAGATGGGTACATAAAGCAGAATGACTTGCA TGGTGCACTCAGGATGTTTGGACAGATGCTGAAACGGAGATGTAAGCCAAATGTTGTAACATATACTTCTCTGATTAACGGTTTTTGCCGCAGTGGCGAT TCCAGTACAGCTGAAACAATTTTTGTGGAGATGCAATTATCTGGCTTAGAGCCAAATGTGGTTACTTACAGCATACTCATCGGGTGCTTCTTTAAGGAGG GTAAGCTTAGAAAAGCTTGCTTGTATTTTGATCAGATGCTTCTCAATAAGTGTGTTCCAAACGATGTTACGTTCAATTATATTGTAAATGGCTTTGCTAA TAATGTGGAAGCAGTGAAGTATGAGGTACCACTTGATGAAACCCCACTGTGTCTGCAAATTTTTGGATGCATGATATCAGATGGATGGGAGCCGAGAGAT GCTGCTCATAGTTCTGTCATATTATGTCTCTGCCAATATAGAATGGTTGAAACTGCAATATACTTTTGTGACAGGATGAGGAACAAAGGCTTTGTTCTGA ATCCTGTCTCTTTCATTGCCCTGCTACATGGACTTTGCTTGGATGGAAGATCACGAGAATGGATGAATATAATACCTTTTAATCCAAGTGAAAAGGAGCT ACGAACTGCCATCGTGTACTCCCAGAAATTGAACCAATTTCTACCGAGAGGGTTCACAGTAGAGGCTTTGAATATTTTGTACTCCTTGTTGGACGCTCTA GTTGTACATGCGGAAGGTTAA
AA sequence Show only first row Show all	>Lus10036090 pacid=23140977 polypeptide=Lus10036090 locus=Lus10036090.g ID=Lus10036090.BGIv1.0 annot-version=v1.0 MSKTLLSRIRPLNHPKPIRPPSSFSSPAPSTSNFRNVVYDVLNILRTDHQWQESLDSLFVSTETEVWEIAHFVFDKIREPVLGLKFFDWASEKSGADKFP LNGFACSSLLKLLARSWVFEEVENLLETMKCKGLIPTREALSVSIQAYAEAGLVDRALVLYNAAPGAYNLFPDTIACNSMLNALVKCKKIDIARRIYGDM VRREGVVDNYSVGIMVRGLCKEGKIDVAKKFIERRWGKRCVPNIVFYNMMIDGYCRNGDIKRAVKLFRELKLKGFLPNLETYGALINGHSKGGDFEEVDK LLVEIKQRGLNVNVWLHNIIADARIKSNCKIKAPETIPDIVTYNSLICGSCRDGKLHGAEELLKEAVKRGLTPNSITYTSLIHAYSKQGKFVKASDLLIE MTKNGYMPDLIAYGALIHGLVCSGEVDIALTVRDEMRIKGVVADANVYNVLLNGLCKKGRLPAAKILLAEMLDQNIAPDAFVNATLVDGFIRNGNLSEAT KIFELTAIKGIDPGVVGYNAMVKGFCKFGLINDAMLFLKKMVSNGHVPDEFTYSTVIDGYIKQNDLHGALRMFGQMLKRRCKPNVVTYTSLINGFCRSGD SSTAETIFVEMQLSGLEPNVVTYSILIGCFFKEGKLRKACLYFDQMLLNKCVPNDVTFNYIVNGFANNVEAVKYEVPLDETPLCLQIFGCMISDGWEPRD AAHSSVILCLCQYRMVETAIYFCDRMRNKGFVLNPVSFIALLHGLCLDGRSREWMNIIPFNPSEKELRTAIVYSQKLNQFLPRGFTVEALNILYSLLDAL VVHAEG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52620			Pentatricopeptide repeat (PPR)...		Lus10036090 [exp]	0	1
AT3G62080			SNF7 family protein (.1.2)		Lus10038021 [exp]	1.0	0.8928
AT5G06810			Mitochondrial transcription te...		Lus10012021 [exp]	2.0	0.8187
AT5G12100			pentatricopeptide (PPR) repeat...		Lus10008650 [exp]	2.4	0.8487
AT2G04865			Aminotransferase-like, plant m...		Lus10007358 [exp]	2.4	0.8347
AT3G19630			Radical SAM superfamily protei...		Lus10020989 [exp]	8.1	0.8078
AT1G58025			DNA-binding bromodomain-contai...		Lus10037368 [exp]	11.8	0.8113
AT3G03750		SUVR3, SDG20	SET domain protein 20 (.1.2)		Lus10003864 [exp]	14.7	0.7526
AT1G70180			Sterile alpha motif (SAM) doma...		Lus10030661 [exp]	18.2	0.7983
AT1G02290			unknown protein		Lus10018907 [exp]	19.6	0.7771
AT1G03560			Pentatricopeptide repeat (PPR-...		Lus10018567 [exp]	19.6	0.7324

Compare expression of checked genes

Lus10036090 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.