Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52590 195 / 3e-64 Putative thiol-disulphide oxidoreductase DCC (.1) AT1G24095 73 / 4e-16 Putative thiol-disulphide oxidoreductase DCC (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030833 [exp] 77 / 2e-17 AT1G24095 253 / 7e-86 Putative thiol-disulphide oxidoreductase DCC (.1) Lus10030653 [exp] 76 / 3e-17 AT1G24095 229 / 2e-77 Putative thiol-disulphide oxidoreductase DCC (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G213200 [exp] 201 / 2e-66 AT1G52590 222 / 5e-75 Putative thiol-disulphide oxidoreductase DCC (.1) Potri.008G147000 [exp] 64 / 1e-12 AT1G24095 216 / 3e-71 Putative thiol-disulphide oxidoreductase DCC (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04134 [flax] [poplar] DUF393 Protein of unknown function, DUF393
Representative CDS sequence Show only first row Show all	>Lus10036091 pacid=23141056 polypeptide=Lus10036091 locus=Lus10036091.g ID=Lus10036091.BGIv1.0 annot-version=v1.0 ATGGCGCTACTCGCTCCCTGCGGCGGGTCAGTACTGTTTCACCGGCCGTCCACCGTGCAAAACGGAAGCAGATTCACCGCTTTAGCTGCTATATCTCCTT CTCCTCCTCCAGCAGAAACGGTGAACTGGGTCGAAGCAACCAATAGCTTCTTCGACAATGATTCTCGACCCATCATGCTATTTGACGGAGTTTGCAATCT TTGCAATGGAGGTGTGAGGTTTGTTCGACAAAACGATCGAAACAGGAGAATTAGGTATGAGGCTCTCCAGAGTGAACAAGGGATGAGACTGCTGAGGAGA TCAGGGAGAGCTCCAGATGATATTTCAAGTGTTGTTCTTGTTGAAAAGGATAGATCGTATATCAAGTCGGAAGCTGTACTGAAGATAATGGAATACATAG ACTTGCCTTTCCCACAGTTAGCATTGTTTCTGCAGTTGGTGCCATTGTTCTTAAGAGATTTCGTGTATGACAATGTTGCAAACAATCGTTACAACATATT TGGTCGCTCAGAATCATGCGAGGTATACTATGATTAA
AA sequence Show only first row Show all	>Lus10036091 pacid=23141056 polypeptide=Lus10036091 locus=Lus10036091.g ID=Lus10036091.BGIv1.0 annot-version=v1.0 MALLAPCGGSVLFHRPSTVQNGSRFTALAAISPSPPPAETVNWVEATNSFFDNDSRPIMLFDGVCNLCNGGVRFVRQNDRNRRIRYEALQSEQGMRLLRR SGRAPDDISSVVLVEKDRSYIKSEAVLKIMEYIDLPFPQLALFLQLVPLFLRDFVYDNVANNRYNIFGRSESCEVYYD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52590			Putative thiol-disulphide oxid...		Lus10036091 [exp]	0	1
AT2G47400		CP12-1	CP12 domain-containing protein...		Lus10001453 [exp]	4.7	0.9215
AT1G79040		PSBR	photosystem II subunit R (.1)		Lus10042461 [exp]	10.6	0.9128
AT5G02120		PDE335, OHP	PIGMENT DEFECTIVE 335, one hel...		Lus10023782 [exp]	10.7	0.9066
AT1G66130			NAD(P)-binding Rossmann-fold s...		Lus10002180 [exp]	12.2	0.9116
AT2G30570		PSBW	photosystem II reaction center...		Lus10024858 [exp]	12.6	0.9121
AT3G25530		GR1, GLYR1, GHB...	glyoxylate reductase 1 (.1.2)		Lus10012301 [exp]	14.2	0.8272
AT3G21870		CYCP2;1	cyclin p2;1 (.1)		Lus10039697 [exp]	15.0	0.9030
AT3G02730		TRXF1, ATF1	thioredoxin F-type 1 (.1)		Lus10020199 [exp]	15.5	0.8952
AT3G10130			SOUL heme-binding family prote...		Lus10022712 [exp]	15.9	0.8799
AT4G09620			Mitochondrial transcription te...		Lus10009420 [exp]	16.5	0.8388

Compare expression of checked genes

Lus10036091 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.