Plant FIBer expression Database

Lus10036092 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G18540 115 / 4e-31 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036093
[exp]
187 / 1e-57 AT4G18540 621 / 0.0 unknown protein
Lus10008576
[exp]
172 / 5e-52 AT4G18540 551 / 0.0 unknown protein
Lus10013937
[exp]
168 / 3e-50 AT4G18540 549 / 0.0 unknown protein
Lus10000522
[exp]
86 / 3e-22 AT4G18540 90 / 8e-22 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G064300
[exp]
170 / 4e-51 AT4G18540 547 / 0.0 unknown protein
Potri.004G054500
[exp]
166 / 7e-50 AT4G18540 593 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10036092 pacid=23141160 polypeptide=Lus10036092 locus=Lus10036092.g ID=Lus10036092.BGIv1.0 annot-version=v1.0
ATGAGGCCTGCTTGTGCTTGTTACCCGTCCATGAACTTCGGGTTGCGTCTTCGTGGACGTGCTGATCGACGAGGGCCTTCTCCATCTTTATGTGTGTTTC
TGTCCTTCATTTTGCAGGAGTGTAGGGCGGAGGTGTGTGTGGTGTGGGTGGCCAAAGGAATTGAAAAGAATTTCGGGGAAGAGATAGCTAGAATGATGAG
GATAGATGACGGGGAGAAGAAGAAGAAGAAGGTTATTGTTCATGATACAGCAGTGCTTGGGAGGCCGAATGTGTCTAAGATGAGCGTGGAAGCTGCTAAG
GATTGGGGTGCGCAAGTTGTGATCGTGACGAGTAACCCGGAAGGAAGCAGGGACGTTGTGAACGCTTGCAAAGATGCCGGCATCCCTGCATTTGGTCCAA
TTTGGGACTCTTAA
AA sequence
>Lus10036092 pacid=23141160 polypeptide=Lus10036092 locus=Lus10036092.g ID=Lus10036092.BGIv1.0 annot-version=v1.0
MRPACACYPSMNFGLRLRGRADRRGPSPSLCVFLSFILQECRAEVCVVWVAKGIEKNFGEEIARMMRIDDGEKKKKKVIVHDTAVLGRPNVSKMSVEAAK
DWGAQVVIVTSNPEGSRDVVNACKDAGIPAFGPIWDS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G18540 unknown protein Lus10036092
[exp]
0 1
AT1G14280 PKS2 phytochrome kinase substrate 2... Lus10012831
[exp]
2.8 0.9689
AT2G02950 PKS1 phytochrome kinase substrate 1... Lus10030480
[exp]
5.1 0.9607
Lus10041636
[exp]
6.0 0.9450
AT1G14960 Polyketide cyclase/dehydrase a... Lus10042489
[exp]
7.7 0.9474
AT5G28010 Polyketide cyclase/dehydrase a... Lus10039891
[exp]
9.2 0.9428
AT2G19860 ATHXK2 ARABIDOPSIS THALIANA HEXOKINAS... Lus10034980
[exp]
9.8 0.8955
AT5G64330 JK218, RPT3, NP... ROOT PHOTOTROPISM 3, NON-PHOTO... Lus10015169
[exp]
12.0 0.9408
AT5G67360 ARA12 Subtilase family protein (.1) Lus10029575
[exp]
12.2 0.9282
AT4G37070 AtPLAIVA, PLP1,... phospholipase A IVA, Acyl tran... Lus10000279
[exp]
14.7 0.9378
AT5G14950 GMII, ATGMII golgi alpha-mannosidase II (.1... Lus10032179
[exp]
15.5 0.9002

Lus10036092 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.