Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18540 559 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013937 [exp] 676 / 0 AT4G18540 549 / 0.0 unknown protein Lus10008576 [exp] 619 / 0 AT4G18540 551 / 0.0 unknown protein Lus10036092 [exp] 194 / 2e-59 AT4G18540 120 / 1e-32 unknown protein Lus10000522 [exp] 88 / 2e-20 AT4G18540 90 / 8e-22 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G054500 [exp] 724 / 0 AT4G18540 593 / 0.0 unknown protein Potri.011G064300 [exp] 698 / 0 AT4G18540 547 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036093 pacid=23141232 polypeptide=Lus10036093 locus=Lus10036093.g ID=Lus10036093.BGIv1.0 annot-version=v1.0 ATGCAGAGTCCAGTGAGGTTTTCAAGCTGCAGAGGAGTTGCATTCGAGATCAAACCTCACCCTGATCATTTTGCAGTCCCACCATCCAAAGAAAGCTCCA CCACCAGCAAGCGTTTCGAATCCCTTTTCTCCTGGATCCATGGTTCCTCCTCCAAGATTCACCCTTCTCTCCACCGAACTGCAAGCAAACCCAGCAGCCA CTTCTGCGACCTCGACTTCGACATTCAAGATGATGATCACGATGATGAAATCGATCTCGAAGCGGGACATGAAGACGAAACGGAGACTGCAGCATTTGCT CCCGGTGCCAGCAAGCGTGAACAACAACAAGCTCAACCCAAGCACCAACAGATGAAGAAGCCAACTACCAGACTGTCTGTCATTCTGCTGGATCAAGGAC TTTTCACCGTCTACAAGCGTCTGTTCGCCGTCGTCTTAACGCTAAACCTCATCGGGTTAGTCCTTGCAGCCACCGGGAATTTCTCCTACGGCAGAAACAG AGCTGCTCTGTTTTCCGTAGCCAACATTTTCGCCCTCACCCTCTGTAGAAGCGAGGCATTCCTCCGAATCGTGTTCTACTTGGCTGTCAAAATATTGGGG AGATCTTTCATCCCTCTTCCTGTCAAAACAATGACGACTTCTCTCCTTCAGAGCTTGGGAGGAATTCACAGTGGATGCGGAATCTCATCCGTAGCCTGGC TAGTCTATTCCTTAATCCTCACCCTCAAATCCAGAGACACTACTTCTCCAGCGATTATAGCCGTTGCTTCCGCCATTCTTGCCCTCCTCTGTCTGTCTTG TTTGGCGGCGTTCCCACTCGTCCGCCACCTCCATCATAACGTCTTTGAGCGGATCCACAGATTCGCTGGATGGACGTCTCTCTGCCTCGTGTGGGCGTTC GTCATACTCACTATCTCCTACGACCAAAACACTAAATCCTACAGCAATCAATTGGGGAGCAAGCTGATTAAAAACCAAGAGTTTTGGTTCACTGTGGGGA TAACTTTACTAATCATCATCCCTTGGCTGACCGTCAGACGAGTTCCAGTGAAAATGTCGTCCCCATCTGGACACGCATCTTTAATAAAATTCGAAGGAGG GATGGAAGCGGGGTTACTGGGGAGAATCAGCCCGTCCCCGTTGTCCGAGTGGCATGCATTCGGAATAATATCCGATGGAAAAGACGAGCACATGATGTTG GCCGGAGCGGTGGGGGACTTTACGAAGTCACTGGTTTCGAATCCCCCTAGTCATTTGTGGGTTCGAGGGGTTCATTTTGCGGGGCTGCCGTACTTGGTGA ACATGTACGAGAAAGTGGTCTTGGTTGCGACGGGTTCAGGGATATGTGTGTTTCTGTCCTTCATTTTGCAGGAGTGTCGGGCGGAGGTGTGCGTGGTATG GGTGGCCAAAGGGATTGAGGAGAATTTTGGGAAAGAGATAGATGGAATGATGAGGATAGAAGAGGAGTCCAAGAAGGAAAACATGATGAAGAAGAAGAAG AAGGTTATTGTTCATGACACAGCGGTACTTGGGAGGCCGAATGTGTCTAAGATGAGCGTGGAAGCTGCTAAGGATTGGGGTGCGCAAGTTGTGATCGTGA CGAGTAACCCGGAAGGAAGCAGGGACGTTGTGAACGCTTGCAAAGATGCCGGCATCCCTGCATTTGGTCCAATTTGGGACTCTTAA
AA sequence Show only first row Show all	>Lus10036093 pacid=23141232 polypeptide=Lus10036093 locus=Lus10036093.g ID=Lus10036093.BGIv1.0 annot-version=v1.0 MQSPVRFSSCRGVAFEIKPHPDHFAVPPSKESSTTSKRFESLFSWIHGSSSKIHPSLHRTASKPSSHFCDLDFDIQDDDHDDEIDLEAGHEDETETAAFA PGASKREQQQAQPKHQQMKKPTTRLSVILLDQGLFTVYKRLFAVVLTLNLIGLVLAATGNFSYGRNRAALFSVANIFALTLCRSEAFLRIVFYLAVKILG RSFIPLPVKTMTTSLLQSLGGIHSGCGISSVAWLVYSLILTLKSRDTTSPAIIAVASAILALLCLSCLAAFPLVRHLHHNVFERIHRFAGWTSLCLVWAF VILTISYDQNTKSYSNQLGSKLIKNQEFWFTVGITLLIIIPWLTVRRVPVKMSSPSGHASLIKFEGGMEAGLLGRISPSPLSEWHAFGIISDGKDEHMML AGAVGDFTKSLVSNPPSHLWVRGVHFAGLPYLVNMYEKVVLVATGSGICVFLSFILQECRAEVCVVWVAKGIEENFGKEIDGMMRIEEESKKENMMKKKK KVIVHDTAVLGRPNVSKMSVEAAKDWGAQVVIVTSNPEGSRDVVNACKDAGIPAFGPIWDS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18540			unknown protein		Lus10036093 [exp]	0	1
AT1G76680		OPR1, ATOPR1	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10030737 [exp]	4.5	0.6182
AT4G18160		KCO6, ATTPK3, A...	Ca2+ activated outward rectify...		Lus10004611 [exp]	5.3	0.6379
AT4G12010			Disease resistance protein (TI...		Lus10029810 [exp]	8.5	0.6078
AT4G10955			alpha/beta-Hydrolases superfam...		Lus10032396 [exp]	21.0	0.5319
AT2G38840			Guanylate-binding family prote...		Lus10024841 [exp]	23.6	0.6463
AT4G12610		RAP74, ATRAP74	transcription activators;DNA b...		Lus10017289 [exp]	25.5	0.6197
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10039547 [exp]	33.5	0.5803
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10021976 [exp]	37.8	0.6236
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10023377 [exp]	42.4	0.6249
AT1G05280			Protein of unknown function (D...		Lus10027153 [exp]	173.5	0.5159

Compare expression of checked genes

Lus10036093 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.