Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14170 309 / 1e-102 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G18485 155 / 5e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 150 / 2e-40 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 149 / 5e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G13230 147 / 2e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G55740 146 / 6e-39 CRR21 chlororespiratory reduction 21, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39530 145 / 8e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G63370 145 / 1e-38 OTP86 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G37310 142 / 1e-37 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G33680 141 / 2e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026778 [exp] 468 / 5e-167 AT4G14170 268 / 3e-86 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002552 [exp] 145 / 2e-41 AT2G22410 299 / 2e-97 SLOW GROWTH 1 (.1) Lus10039703 [exp] 149 / 2e-40 AT4G18750 394 / 6e-127 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001220 [exp] 147 / 2e-39 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018492 [exp] 144 / 1e-38 AT4G18750 385 / 2e-123 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10025915 [exp] 144 / 1e-38 AT3G25060 627 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026460 [exp] 145 / 2e-38 AT1G15510 1030 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040504 [exp] 144 / 3e-38 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039117 [exp] 144 / 3e-38 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G466066 [exp] 152 / 4e-41 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G060600 [exp] 149 / 6e-41 AT3G24000 331 / 3e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G093000 [exp] 149 / 3e-40 AT1G69350 832 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G215500 [exp] 146 / 5e-39 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G245200 [exp] 142 / 8e-38 AT3G25060 683 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G208000 [exp] 141 / 3e-37 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G065500 [exp] 140 / 3e-37 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G244500 [exp] 140 / 3e-37 AT3G15130 891 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G128800 [exp] 139 / 4e-37 AT4G25270 664 / 0.0 organelle transcript processing 70, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G047600 [exp] 140 / 6e-37 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10036095 pacid=23141064 polypeptide=Lus10036095 locus=Lus10036095.g ID=Lus10036095.BGIv1.0 annot-version=v1.0 ATGAATGTAGCATTAGGATGTCGAGTGAGAACAATAACGGCTCCTTTCCTGTCCAGCAAGTTCCTCTTCTCAACCATACACCATCATCATCATCCCACAG AACCAGCAACTGATGCATCATCCTTGGTTTCCTCTTACTTTCGCCTTCTCCACTCTTCTCCTCACCCTACACATCTTCGTCACCTCCATGCTCGCTTGCT CCGCACCTTCCTTTACAACAATGTCATTCTCACTTCCAAACTTGTTTTGATGTACTCCCGCCTTGGCAAACTCAGACCTCATTCTCTTTCCGCTTTCTTC CATATGCCCAACAGAAATATCTATTCCTGGAACATCCTCATCGGCGAGTTCTCTCGATCGAACACGCCTGAGAAATCCATCGACCTTTTTCTTCGCATGT GGAGGGAAGCCGAGGCACGGCCGGATGATTTCTCCCTCCCTCTTGTTTTACGGGCCTGCGCTGGATCTGGGTCAGCTGGATTTGGGGTTTCGTTACATGG GTTATGTGTGAAAATGGGTTTGGTGGATAATGTCTTCGTTGCCTCAGCTTTGGTGTTTATGTATGTTACTTTAGATAGAATGTGTAATGCAAGGAAGGTG TTCGATGAAATGTCTGAGAGAGATGCAGTGTTGTGGACTTCTATGTTAGCTGGCTATTCCCAGAAAGGGGAAGCAGTGTTAGGTCTGCGATTGCTGAGGG AGATGGTAGATTCTGATGTTGAGCTTGATGGGGTTGTTATGGTGAGCGTGCTTTCTATGTGCAGCCAATTGGGTTGGTTAAAGCAAGGGAAGACTGTCCA CGCTTGGTGCTTGAGAAATTGCTTGGGAACAATGGAGTTGAGTCTAGGAAACGCTATAGTTGATATGTATGTGAAATGTTTCAAACTAACTTACGCGCAA ATGACTTTTGATGCCATGCCTGTCAAAGATGTGTTTACTTGGAGCTCTTTGAGTAGTTCCTGA
AA sequence Show only first row Show all	>Lus10036095 pacid=23141064 polypeptide=Lus10036095 locus=Lus10036095.g ID=Lus10036095.BGIv1.0 annot-version=v1.0 MNVALGCRVRTITAPFLSSKFLFSTIHHHHHPTEPATDASSLVSSYFRLLHSSPHPTHLRHLHARLLRTFLYNNVILTSKLVLMYSRLGKLRPHSLSAFF HMPNRNIYSWNILIGEFSRSNTPEKSIDLFLRMWREAEARPDDFSLPLVLRACAGSGSAGFGVSLHGLCVKMGLVDNVFVASALVFMYVTLDRMCNARKV FDEMSERDAVLWTSMLAGYSQKGEAVLGLRLLREMVDSDVELDGVVMVSVLSMCSQLGWLKQGKTVHAWCLRNCLGTMELSLGNAIVDMYVKCFKLTYAQ MTFDAMPVKDVFTWSSLSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14170			Pentatricopeptide repeat (PPR)...		Lus10036095 [exp]	0	1
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10015225 [exp]	1.0	0.9010
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10002599 [exp]	5.7	0.8693
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Lus10012890 [exp]	6.6	0.8676
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10030932 [exp]	9.2	0.8618
AT1G12770		ISE1, EMB1586	INCREASED SIZE EXCLUSION LIMIT...		Lus10038140 [exp]	9.3	0.8728
AT4G14170			Pentatricopeptide repeat (PPR)...		Lus10026778 [exp]	9.7	0.7976
AT2G40720			Tetratricopeptide repeat (TPR)...		Lus10027366 [exp]	13.1	0.8527
AT5G22100			RNA cyclase family protein (.1...		Lus10004092 [exp]	14.0	0.8502
AT1G72040			P-loop containing nucleoside t...		Lus10016950 [exp]	14.9	0.8455
AT2G33680			Tetratricopeptide repeat (TPR)...		Lus10021232 [exp]	15.8	0.8620

Compare expression of checked genes

Lus10036095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.