Plant FIBer expression Database

Lus10036097 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G06840 62 / 2e-12 unknown protein
AT5G49170 58 / 1e-10 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022872
[exp]
87 / 5e-22 AT5G49170 97 / 6e-26 unknown protein
Lus10024954
[exp]
81 / 1e-19 AT5G49170 96 / 3e-25 unknown protein
Lus10026782
[exp]
67 / 6e-15 ND 42 / 4e-06
Lus10006495
[exp]
57 / 3e-10 AT5G49170 118 / 9e-34 unknown protein
Lus10006494
[exp]
48 / 4e-07 AT3G06840 102 / 1e-27 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G219500
[exp]
77 / 6e-18 AT3G06840 136 / 1e-40 unknown protein
Potri.010G010600
[exp]
71 / 2e-15 AT3G06840 132 / 4e-39 unknown protein
PFAM info
Representative CDS sequence
>Lus10036097 pacid=23141203 polypeptide=Lus10036097 locus=Lus10036097.g ID=Lus10036097.BGIv1.0 annot-version=v1.0
ATGGGAAGCAGAAGATCCCCTGTTTTCCCAATGCCGCATCAGCCCGACCTTGCTCACCATTTCAGCGACTATGGCTTCGACCCTCAAATCGACTACTTCC
AGTTGATGCAAGAAGCCAGAAAGCACAAGCGAGACGCTACGACGACGACAACAACAACAACAACAAAAACCAGGCCCATAGATAACATAATACACTTCAA
GCTCCGAAAGCCCATCTCCAATCACGAATCCAACAGTAAAACCACCACAACTTCGGAGAAGAAGCGGCGGCGGTGGTGGAAAAACGCGCTCCACTTGTTG
AAGCGCAACTGGATTCTGCATAGGCACAACCGCCGTGACAAAGAAGAAGAAGAGGAGGTTCACAGAGCTCGGGCTCGTGATCTCCTCCGGGCATCCATGT
CAGGACCTGTTTCCATAACTCCTCCTAAATACCAAACGTGCAACCCCGTTAGCGTCGGAGAGCTTAACATGGAGCAGCACAAGAAGAGGATGTCTACCTC
CGCCTTGCCCACTTGCTTGCTTCCTTTTTGA
AA sequence
>Lus10036097 pacid=23141203 polypeptide=Lus10036097 locus=Lus10036097.g ID=Lus10036097.BGIv1.0 annot-version=v1.0
MGSRRSPVFPMPHQPDLAHHFSDYGFDPQIDYFQLMQEARKHKRDATTTTTTTTTKTRPIDNIIHFKLRKPISNHESNSKTTTTSEKKRRRWWKNALHLL
KRNWILHRHNRRDKEEEEEVHRARARDLLRASMSGPVSITPPKYQTCNPVSVGELNMEQHKKRMSTSALPTCLLPF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G49170 unknown protein Lus10036097
[exp]
0 1
AT5G50375 CPI1 cyclopropyl isomerase (.1.2) Lus10038969
[exp]
3.9 0.9033
AT2G02061 Nucleotide-diphospho-sugar tra... Lus10031330
[exp]
7.9 0.8989
AT1G79580 NAC ANAC033, SMB, N... NAC (No Apical Meristem) domai... Lus10009939
[exp]
8.8 0.8944
AT1G03220 Eukaryotic aspartyl protease f... Lus10041223
[exp]
13.7 0.8726
AT1G26870 NAC FEZ, ANAC009 FEZ, Arabidopsis NAC domain co... Lus10036749
[exp]
15.2 0.8944
Lus10026715
[exp]
16.9 0.8817
Lus10033509
[exp]
21.0 0.8709
AT4G15560 AtCLA1, DXS, DX... 1-DEOXY-D-XYLULOSE 5-PHOSPHATE... Lus10015518
[exp]
21.5 0.8622
AT3G20840 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA... Lus10031831
[exp]
26.6 0.8693
AT1G52140 unknown protein Lus10006040
[exp]
27.4 0.8779

Lus10036097 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.