Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26930 507 / 1e-180 CMK, CMEK, ISPE, ATCDPMEK, PDE277 PIGMENT DEFECTIVE 277, 4-\(cytidine 5′-diphospho\)-2-C-methyl-d-erythritol kinase, 4-\(cytidine 5′-diphospho\)-2-C-methyl-d-erythritol kinase, 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026783 [exp] 690 / 0 AT2G26930 566 / 0.0 PIGMENT DEFECTIVE 277, 4-\(cytidine 5′-diphospho\)-2-C-methyl-d-erythritol kinase, 4-\(cytidine 5′-diphospho\)-2-C-methyl-d-erythritol kinase, 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G225100 [exp] 559 / 0 AT2G26930 487 / 8e-173 PIGMENT DEFECTIVE 277, 4-\(cytidine 5′-diphospho\)-2-C-methyl-d-erythritol kinase, 4-\(cytidine 5′-diphospho\)-2-C-methyl-d-erythritol kinase, 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase (.1) Potri.009G021800 [exp] 545 / 0 AT2G26930 480 / 6e-170 PIGMENT DEFECTIVE 277, 4-\(cytidine 5′-diphospho\)-2-C-methyl-d-erythritol kinase, 4-\(cytidine 5′-diphospho\)-2-C-methyl-d-erythritol kinase, 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF00288 [flax] [poplar] GHMP_kinases_N GHMP kinases N terminal domain
Representative CDS sequence Show only first row Show all	>Lus10036098 pacid=23141137 polypeptide=Lus10036098 locus=Lus10036098.g ID=Lus10036098.BGIv1.0 annot-version=v1.0 ATGGCCGCCTCTAGTTTGCTCTGCCAAAACCCAATCGTCAATCCCTCTTCCAATTCCTTCACCAGAAGCAATTTCTCCTCCTTCAAGCCATCTGGGTCGG TATGTTTCACCCAGAACTTCCAGTTCCAGAGAAATTCTGTCGTGAAGGCCAGCAGGAAACAAGTAGAGGTAGTGTATGATCCTGATGAGAGGTTAAACAC GCTAGGTGATGAGGTCGATAGGGAAGCTCCTCTTTCCCGCCTCACCCTTTTTTCTCCTTGCAAGATCAATGTTTTCTTGAGAATTACCAGCAAGAGGGAA GATGGGTTCCATGATTTAGCATCTCTTTTTCATGTGATTAGTTTAGGAGACATAATTAAGTTCTCTTTGTCTCCGTCAAATAAAACTGATCGTTTATCTA CCAATGTGGCTGGGGTACCCCTTGATGAAAGGAATTTGATTATAAAAGCACTTAACCTCTATAGAAAAAAGACAGGCACTGATAAATACTTCTGGATTCA CTTAGATAAAAAGGTGCCCACGGGAGCAGGACTGGGTGGTGGCAGCAGCAATGCTGCAACTGCTCTGTGGGCTGCCAATCAGTTCAGTGGTGGTCTTGCT TCTGAGAAGGAACTCCAAGAATGGTCTGGAGAGATTGGGTCAGACATTCCCTTCTTTTTCTCGCATGGAGCTGCCTATTGCACTGGCCGTGGCGAGGTCG TTGAAGATATCCCTTCACCTATTCCTTTGGACATTCCAATGGTTCTTGTAAAGCCCCAACAAGCATGCCCTACTGGTGAGGTCTACAAGCATCTCCGAGT GGACCAAACTAGTCAAGTTGATCCTTTGACATTGCTGGAGAAGATATCAAGGAATGGCATAACACAAGATGTTTGTATAAATGATCTAGAACCTCCAGCA TTTGAAGTCCTCCCTTCCCTTAAAAGGTTGAAGCAACGTATAGCTGCAGCTGGCTGTGGACAGTATGATGCTGTTTTCATGTCTGGGAGTGGTAGCACCA TTGTTGGGGTTGGTTCTCCGGATCCTCCGCAGTTTGTGTATGATGATGAAGACTATAAGGATGTTTTCTTGTCAGAAGCGAACTTTGTGACGCGGGAACC TAATGAGTGGTACAAAGAACCGGCTTCCATCACTTCCAGCGTCTCCTCACCAGAAGAGGAGTTGTCTCAGTCTACAAGTCGCGACTAG
AA sequence Show only first row Show all	>Lus10036098 pacid=23141137 polypeptide=Lus10036098 locus=Lus10036098.g ID=Lus10036098.BGIv1.0 annot-version=v1.0 MAASSLLCQNPIVNPSSNSFTRSNFSSFKPSGSVCFTQNFQFQRNSVVKASRKQVEVVYDPDERLNTLGDEVDREAPLSRLTLFSPCKINVFLRITSKRE DGFHDLASLFHVISLGDIIKFSLSPSNKTDRLSTNVAGVPLDERNLIIKALNLYRKKTGTDKYFWIHLDKKVPTGAGLGGGSSNAATALWAANQFSGGLA SEKELQEWSGEIGSDIPFFFSHGAAYCTGRGEVVEDIPSPIPLDIPMVLVKPQQACPTGEVYKHLRVDQTSQVDPLTLLEKISRNGITQDVCINDLEPPA FEVLPSLKRLKQRIAAAGCGQYDAVFMSGSGSTIVGVGSPDPPQFVYDDEDYKDVFLSEANFVTREPNEWYKEPASITSSVSSPEEELSQSTSRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26930		CMK, CMEK, ISPE...	PIGMENT DEFECTIVE 277, 4-\(cyt...		Lus10036098 [exp]	0	1
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10021480 [exp]	1.4	0.9803
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10022583 [exp]	2.8	0.9732
AT2G27510		ATFD3	ferredoxin 3 (.1)		Lus10004870 [exp]	3.5	0.9680
AT5G23160			unknown protein		Lus10010194 [exp]	4.0	0.9604
AT3G29635			HXXXD-type acyl-transferase fa...		Lus10005362 [exp]	5.3	0.9661
					Lus10026081 [exp]	5.9	0.9619
AT4G35160			O-methyltransferase family pro...		Lus10015311 [exp]	6.5	0.9626
AT5G16180		CRS1, ATCRS1	ARABIDOPSIS ORTHOLOG OF MAIZE ...		Lus10017618 [exp]	6.7	0.9413
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10001210 [exp]	7.4	0.9636
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Lus10012212 [exp]	8.1	0.9563

Compare expression of checked genes

Lus10036098 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.