Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56790 199 / 4e-55 Protein kinase superfamily protein (.1) AT1G55200 194 / 4e-53 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G24540 188 / 2e-52 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT3G13690 191 / 1e-51 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G07870 178 / 2e-49 Protein kinase superfamily protein (.1.2) AT3G20530 176 / 5e-49 Protein kinase superfamily protein (.1) AT3G24550 179 / 3e-48 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT5G02800 172 / 1e-47 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT1G76370 169 / 9e-47 Protein kinase superfamily protein (.1) AT1G61860 169 / 1e-46 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024111 [exp] 387 / 3e-125 AT5G56790 317 / 2e-98 Protein kinase superfamily protein (.1) Lus10041608 [exp] 388 / 5e-125 AT1G55200 318 / 4e-98 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10018944 [exp] 230 / 4e-67 AT3G13690 332 / 2e-105 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008566 [exp] 202 / 3e-56 AT1G55200 657 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10006148 [exp] 201 / 3e-55 AT3G13690 1084 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10001996 [exp] 201 / 6e-55 AT3G13690 649 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10041426 [exp] 176 / 6e-49 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023473 [exp] 174 / 3e-48 AT5G18610 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040350 [exp] 174 / 5e-48 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G224800 [exp] 512 / 4e-175 AT5G56790 249 / 1e-73 Protein kinase superfamily protein (.1) Potri.001G035900 [exp] 416 / 4e-137 AT5G56790 311 / 1e-96 Protein kinase superfamily protein (.1) Potri.003G189850 [exp] 303 / 2e-93 AT5G56790 319 / 3e-99 Protein kinase superfamily protein (.1) Potri.005G185500 [exp] 241 / 5e-71 AT5G56790 348 / 1e-111 Protein kinase superfamily protein (.1) Potri.001G200000 [exp] 207 / 1e-57 AT3G13690 1051 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.003G034900 [exp] 202 / 6e-56 AT3G13690 1045 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G150100 [exp] 192 / 2e-52 AT3G13690 773 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.001G421400 [exp] 181 / 9e-51 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.011G000600 [exp] 177 / 2e-49 AT3G20530 434 / 6e-152 Protein kinase superfamily protein (.1) Potri.009G026500 [exp] 176 / 5e-49 AT1G07870 595 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10036100 pacid=23141159 polypeptide=Lus10036100 locus=Lus10036100.g ID=Lus10036100.BGIv1.0 annot-version=v1.0 ATGGGAGGGGAGGAATTTATGATTATGAATTCCAGCCCAGCTAATCAGAGGGTGGTGGTGATTCAGGACTCCTTCAATCAACTTAGCCCTCTTGCCATAA TGTGGGTTTTACATGGATTACCCCTTAATCCAGGGGATTCTCTTACACTCCTTCCAGTTCTTCACCGTTTGAATAACTCATTGACATACAGAACCAAATT GGGTTCCACTGCTTCTGGAACAAACAAGGAAGCAGTGATCAGAGAAACTGCAAGAAGGAAGAAACAGGCTGAGTTTGACACCAATCTTGATCTTATCCAC ATCTCCAACATGTTCCAAGCACACAAGGTTGGATTCAAGATAGAAGTAGCTGTGGGGTGTTCAGCAAAGCGTGTTGCCCTGGAAAGAGTTGAGAATCTGA AAGCAACATGGGTGATACTCGACAGGGAGATGAAAAAACACAGGAAATTCTTCCTCCACAATCTTTCCTGTGGGATTTCCAGGATGAAGAGGAACAATGT GGTCAAACAGCTGAGAGGGCCAACTAAGATTGTTACTAATCTTAAGAGTGCTCATCATCAGAAAGCAAGCCACAAGCACATCCCCCTGACTTACGGAGAA ATGTTACCTGAAACCCCTGAAGACGATGATCTCTTCAGCCTTGAGCTTCCACCATCCAATTCTTCTGTCATAGACACGAATCAAACAGCTCTACTAGTCC AGAAAGAAACAAATATCAGCAGCAAACAAGTGTTTGAGAAGTGGCAAGCTGAAGCCATGTTCCAATGTTCAGTCTGCACGGTGTGCAAGACTAGAAGAGC ATTACCAATTGACCCCAAGGATGCGAGTTTCCCGTACCAAGTGATTCAAGCTGCTACTGATGATTTTTCATCGAGCAACTTTATGTCCAAGGATGGTACA GGCTCCACGTTCAGAGGGAAGCTGAAGAGCAGCAACTATAAGATAATTGTCAAACAGTGGAAGAGTTCAGTTATCTTGAATGGAAATGCAGAATTCGGCT TCCAAGTTAACATTCTCAGTACTGTTAGACACAATAACGTTCTGATGCTAATGGGATATTGCTCACAAGGGAGCTTGAAGATGCTTGTTTATGAGTATGC CTGTAATAGTACACTTGATCAACATCTATCAAAACACTGTCCATTGCCACTGGCGTGGTCAGACAGGATGAAAGTAGCCCTTGGAACTGCTAAAGGACTA AACTATCTCCATGAAAACAACATAGTTCACAGACATGTTAAAGCAAGCAGTATCTTTCTAACACATGATTTCGAGCCTATGCTTGGTGATTACGGAGTTT CAGGGATAGCAGATTCAGAAGGTTCAACAGAATCATTAGTATACTTAGCACCAGAATGTCAAGCGGACAGCACTCTTTCTGCCACAACTGATGTGTATGC ATTTGGAGTTGTTCTGTTGGAGTTGATCACAGGACAAAGTGCAAACGAAGGAGCAGAAATCGGGTTATCAAAGAAAACTGGTCTTGTTGGATGGGCAAGG CCAATTCTGAGAGAAAGAACTCATTTCCAGCTCATTGACACGAGAATCGTTAGGTCCCATGATGGTGAACAGCTCTACTGGATGTGTAGATTGATTCACA AATGTCTTGCTGAAAGTCCTACGAAAAGACTCACCATGGATGCGGTGGTGTCAGCATTGGAGTGCATAGCAGAAAGGAGAGAGCAGAGCATACTGGACGA TGTTTTGGCAGTGAGATCAACTCTATCTCGTCCCAGTGCATTTGAGAATTCTGATGATACAATGTGGACATATGATAGGGGGAACTTGAGCAAGGACAAA ACAGATTGGGAGATGGGGGAGGAGCAGAGCAGTAAAATATCAAATTCAGCAAATATTTCAACAAGCTCCTCCTTTTTCAGTGGGTCTACCAGTATTGAAA TGAGGACTATGGGTAGACCATCTTTGGTTTACGCAGAAATGCTTGATTAA
AA sequence Show only first row Show all	>Lus10036100 pacid=23141159 polypeptide=Lus10036100 locus=Lus10036100.g ID=Lus10036100.BGIv1.0 annot-version=v1.0 MGGEEFMIMNSSPANQRVVVIQDSFNQLSPLAIMWVLHGLPLNPGDSLTLLPVLHRLNNSLTYRTKLGSTASGTNKEAVIRETARRKKQAEFDTNLDLIH ISNMFQAHKVGFKIEVAVGCSAKRVALERVENLKATWVILDREMKKHRKFFLHNLSCGISRMKRNNVVKQLRGPTKIVTNLKSAHHQKASHKHIPLTYGE MLPETPEDDDLFSLELPPSNSSVIDTNQTALLVQKETNISSKQVFEKWQAEAMFQCSVCTVCKTRRALPIDPKDASFPYQVIQAATDDFSSSNFMSKDGT GSTFRGKLKSSNYKIIVKQWKSSVILNGNAEFGFQVNILSTVRHNNVLMLMGYCSQGSLKMLVYEYACNSTLDQHLSKHCPLPLAWSDRMKVALGTAKGL NYLHENNIVHRHVKASSIFLTHDFEPMLGDYGVSGIADSEGSTESLVYLAPECQADSTLSATTDVYAFGVVLLELITGQSANEGAEIGLSKKTGLVGWAR PILRERTHFQLIDTRIVRSHDGEQLYWMCRLIHKCLAESPTKRLTMDAVVSALECIAERREQSILDDVLAVRSTLSRPSAFENSDDTMWTYDRGNLSKDK TDWEMGEEQSSKISNSANISTSSSFFSGSTSIEMRTMGRPSLVYAEMLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55200			Protein kinase protein with ad...		Lus10036100 [exp]	0	1
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10001922 [exp]	1.0	0.9211
AT3G05580		TOPP9	type one protein phosphatase 9...		Lus10031489 [exp]	4.6	0.9147
AT2G04845			Acyl-CoA N-acyltransferases (N...		Lus10006397 [exp]	5.8	0.8713
AT1G61780			postsynaptic protein-related (...		Lus10002066 [exp]	6.3	0.9001
AT5G06830			unknown protein		Lus10016277 [exp]	7.9	0.9088
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042905 [exp]	8.5	0.9129
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10041237 [exp]	10.1	0.9099
AT1G30140			unknown protein		Lus10024751 [exp]	10.5	0.9158
AT1G15200			protein-protein interaction re...		Lus10023800 [exp]	13.4	0.9114
AT4G26310			elongation factor P (EF-P) fam...		Lus10007884 [exp]	13.8	0.8956

Compare expression of checked genes

Lus10036100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.