Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026785 [exp] 427 / 4e-148 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036102 pacid=23140978 polypeptide=Lus10036102 locus=Lus10036102.g ID=Lus10036102.BGIv1.0 annot-version=v1.0 ATGGCTCCTCCTCCTCCTCCTCCTCCTCAACATACTCGTCGTCGTGACGGCGCCACCATCCTTGAGATTGACAGACGCCAACTCATAATTCGCTCTCACC AGGTGGCAATGGCTGCTGCTGGTGGTGGTCCCAGCCGACTCATCCCTTCTCATGTTCCTTCTGATGAGTCATCCAAACCCAAAACCAAACTGGGCATCAT CAGAATCAAAATCCCACCTACTCTTACTCCTACTCCTACTCCCCTAGGCGTCGCCACAAATGAGGTTTCTGGCAATGGATTTAACAGTGACAACATCAAG AAAGCAACCAACAATGGTCCTTGTATCCATGAGTGCCATAGGGGGTTCGAGTCGAGAAAAGCCTTAGGTGGCCACATACTCCATCGCCATCCAAGGAATT CAAACAACAACAATACAGCAATTGTAAGTGCACCACCACCACCATCACCACCAAAAAGGCCCACCATGGAGAATTTGAAACATGATAGAGAACAGGAGGT GATTAGAGCACACAAATGCTTGAATTGCAACATGATGTTCTCTAAGCGGACATCTCTCTTAATCCACATCAAAGACTGCCATTACCAATCTCCTCCTCCA CCCCCACCACCACCACCACAACAAGAGGACGACGACAACAACAACAATAGCATCATCACCACAAAATTCCAAGCTCCTCCTCCTGTTGACCTTGCACAAT TTCCTCCTCCTAACCCCAACAATCCTAGTAGGATTGTTGCTGCTGTGCCCAACCTAAAAGATGTGGCTAGTAATATTATTCCATCACTCTCATCGTGGGG GAAGAAGGCCAAAAGGAGATTCTTCACTAATTCTCCCCAAGATCCAGAACTTGAAGATATTGCTGACACTCTTGTTCAATTGTCTTCAGCGCCAGTCATT TTCGAGAAAGATGAGGGGGGAAATGATCTGAAAAAGAAGCGCAGGTTCATCAGCCTCTCCAAGAAGGAGAGAATTCATGATTGGGTATATCAAGAAAACC TCAAGAAGAAGAAGAAGAAAATAAATCTGCATCAGCTTATTATTCCATCTCCAGTTCAACAACATGGTGCAGGTACTAGTCCTCTACAACTCAAACTAGC TGATTCAATTGTGATGCCAAATATGAGAAATAACAAGAGGAGTTGCAAATATATGAGTTCTATAACTAGTGCGAGTTCCAGTTCTATTGCTAGTAGTGGA GATTTCTCTAACGATTCAGTTTCAGAACCAGGTGCACTAGGGTCTTCATCAAGAGCTGGTGCTGCTCAATCTAAGGGGATCATCCAAGTGTGGAAGAATC ATAATCAAATACTCTGA
AA sequence Show only first row Show all	>Lus10036102 pacid=23140978 polypeptide=Lus10036102 locus=Lus10036102.g ID=Lus10036102.BGIv1.0 annot-version=v1.0 MAPPPPPPPQHTRRRDGATILEIDRRQLIIRSHQVAMAAAGGGPSRLIPSHVPSDESSKPKTKLGIIRIKIPPTLTPTPTPLGVATNEVSGNGFNSDNIK KATNNGPCIHECHRGFESRKALGGHILHRHPRNSNNNNTAIVSAPPPPSPPKRPTMENLKHDREQEVIRAHKCLNCNMMFSKRTSLLIHIKDCHYQSPPP PPPPPPQQEDDDNNNNSIITTKFQAPPPVDLAQFPPPNPNNPSRIVAAVPNLKDVASNIIPSLSSWGKKAKRRFFTNSPQDPELEDIADTLVQLSSAPVI FEKDEGGNDLKKKRRFISLSKKERIHDWVYQENLKKKKKKINLHQLIIPSPVQQHGAGTSPLQLKLADSIVMPNMRNNKRSCKYMSSITSASSSSIASSG DFSNDSVSEPGALGSSSRAGAAQSKGIIQVWKNHNQIL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10036102 [exp]	0	1
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10036719 [exp]	8.7	0.8277
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10001168 [exp]	10.8	0.7489
AT4G18335			unknown protein		Lus10028125 [exp]	21.5	0.6961
AT4G26200		ACS7, ATACS7	1-amino-cyclopropane-1-carboxy...		Lus10008579 [exp]	32.6	0.7866
AT5G62280			Protein of unknown function (D...		Lus10031122 [exp]	45.6	0.7577
					Lus10026124 [exp]	49.3	0.7368
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10025797 [exp]	60.2	0.7602
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10029033 [exp]	68.5	0.7818
AT4G26010			Peroxidase superfamily protein...		Lus10005679 [exp]	87.7	0.7595
AT4G08850			Leucine-rich repeat receptor-l...		Lus10004046 [exp]	96.1	0.7312

Compare expression of checked genes

Lus10036102 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.