Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08400 671 / 0 RINT-1 / TIP-1 family (.1) AT3G47700 450 / 3e-146 MAG2 maigo2, RINT-1 / TIP-1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024240 [exp] 442 / 6e-143 AT3G47700 922 / 0.0 maigo2, RINT-1 / TIP-1 family (.1) Lus10023609 [exp] 431 / 6e-139 AT3G47700 918 / 0.0 maigo2, RINT-1 / TIP-1 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G020600 [exp] 908 / 0 AT1G08400 713 / 0.0 RINT-1 / TIP-1 family (.1) Potri.015G063100 [exp] 470 / 1e-153 AT3G47700 872 / 0.0 maigo2, RINT-1 / TIP-1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04437 [flax] [poplar] RINT1_TIP1 RINT-1 / TIP-1 family
Representative CDS sequence Show only first row Show all	>Lus10036104 pacid=23141234 polypeptide=Lus10036104 locus=Lus10036104.g ID=Lus10036104.BGIv1.0 annot-version=v1.0 ATGGAATCTCCAATTTCTTCTTCTTCAGTTTCGTCGGATCGTGCTCAGGGCGTTTTGCCCAGAAAAGGGGAGCTTCCCTTGCACCACTTGGAGTTCCTGA ATCAAAATTTGTCGACCTGGGAAGATCTACTCACCAAAGCTCCTCTTCTCCTATCCGATTTGGGGAAGCTATGCAATGACTACGACGTTAATCTCTTGGA CCTGCACCGCCAACTCTCAAAACTTATTGTTTCATGGATTTCTTGCTCCTTTGCGGCCAAATCTTCCGTCCGGAATCTCTCCGTGTCTTTGGAGAACCTC TGCCTTGTCTCTTCTCAATGTGGGATTGGTTCGAAGAAGCATCAAACTGTGGTGATGGAGGAGTTGCCTCAGCTCGCCAAGCGGGTCCTCCTCATCCAAA CTATCAGGGAATATGCTGATACTGCTTTGCGGTTAGAACCTTTGATTGGAGACCTTGAGGATGTGGTATTTTCTAGTGGTGCTAACTGTGTGAGGAATAT GATTTCAACAAAGCTTCTCACATCACAAGTTTCAATGGATTTCGGGCCGAAGCAAGAGATGTTAAGCCGAGCTATTAAGTTGATGAATGACATCGAGAGG GTCTTGGTTGAAATAGTGCAAAGTCATCCTCAGTGGATTAGCCTTTTGGATTCGGTTGACGCTAGGGTTGAGAAAACTTTAGCTATCGTGCGGCCACAAA TCTTTGCTGATCATCGTGCCCTTCTTGCTTCTTTAGGCTGGCCGCCTAAGCTGTCCCTGTCAAAAACAGATGGCAGAGAAATAGTTTCTATACCCAATCC TCTGGTTTTAATGGGAGGAGACAAGAGAGAACTCTATTCCAAAAGTTTTCTCACTGTCTGTGCATTGCAGCATATGCAAACACGAAGAGAATCTCGCCAA TATAAGAGCACTGAACCGAAGGAGCATAGCATTGGCCTTTGGGCAATTGATGAACTAGTTTCTCCCATTGCATCACGGATGGAATACCACTTCTCTAAAT GGGATGAGCAGCCTGAACTGATGTTTGCTCTTGTGTATAAAACTACTAGTGACTTTATTGTAGGAGTGGATGACATCTTGCAGCCTTTAATCGATAGAGC ACGACTGGTGAGCTACAGTGCAAAAGAAGCTTGGGTATCTGCAACGGTCCAGCTGCTTTCTGGTTTTCTTGTAAGAGGCATTTTTCCAGTTCTTGTTGAA AAATACAAGAAGAAAGAGACGAAATCAGATGCTATATCTTCATGGCTTCACTTAATAGACTGCATGATTGCTTTTGATAAACAAATGCGATCACTCGTCA ATTCAGATTCATGTTTTTTCTTGGAAGATTCTGAAAGGTTTGAAGGGCTCTCAAGAAGTCTATCAGTATTAGAAGTTTTCTGTGAGATGCCAGATTGGCT GAAACTTTGGGCTAGAATAGAGGTCAAGGATGCCTGGAACAAACTGAAACCTGAGATGGGAGATGAGAGATTTTGGTCAGTTAATATGAAAGATAGAAAC GATTCTCAGATTGGTACTGAATCAGACCATTTCTTGATGTCTACAAGTCAAGAACATAAAGCACCAGCAATAGCAGAATTTTCTTTGAAAACCATCTGGC AATTGATTGAGAAGAGTCGAAGTTTGCCTGCTGTTCTACCACGAGTTCAGTTCCTGAGATCAACTGCTTGCAGATTTATGTGGTACTTTCTTAATGTATT GGTTTTTCGATGTAAGAACACCGAGTACCCTGCCGACGACATAGGTGATGCCTTAACCAGAGTATGTGGATCTATCAATGCAGCCAGATACCTTGAGTTT AAATTGAAAGAATGGAGTGATGACATTGAATTCCTAGAGATGAGAATCGCTGAAAGGGGACCTGAATTTTCTGGGAAGTACAGTGGTGAAAATGCTTGTT TCTTCTATGAAGAAATTAACAGTTTAGGAGATATGCAGACTAACTGGCTTCTGGAGATAGCTTCTGTTCTTCTGCATCATTTTGAAACACTTACCTGGAA TTACACCCAAAACAAAAGACGGTTTGAGCAACGGCAAGAAGAAGCCATTAAAGATGGAGGTTCAGAGATTGATTTAGTGGTTTCCGTAGACCTTGTAGAG GGGCTAGACGCATTGAGAAACCAACTTGAAGTTCTCAGTACAAGTCTAAATGCAAAGGACTTCTTCGACTTATGGAGAAGTAGCGCTGATGGGTTGGATC ATTACATGTATCGCATCATCTTCTCCAACACTTTCCAGTTTTCAGGGGAAGGAATCAAGCAGTTTGAAATTGACATGAAAGCGCTATTTCTCGTTTTCAA ACCTTTTTGCGTTCGGCCTGAGGCATTCTTCCCATGTATATTAGAGACTCTTAAGCTGTTGACACTGGATAAGGAAGAGGCCAACCAACTGCGACTGGTT TTATCTAGGGAGGGGGAAAGCAGGGCAAGGTGCATGCAGCAGTTTTGTAGTATGATAAGACAGTTGAGTCATGACCAAGCCGTCAAAGTTTTGAGGATGA GAAAATGGCTGGATACTTACTGTTAA
AA sequence Show only first row Show all	>Lus10036104 pacid=23141234 polypeptide=Lus10036104 locus=Lus10036104.g ID=Lus10036104.BGIv1.0 annot-version=v1.0 MESPISSSSVSSDRAQGVLPRKGELPLHHLEFLNQNLSTWEDLLTKAPLLLSDLGKLCNDYDVNLLDLHRQLSKLIVSWISCSFAAKSSVRNLSVSLENL CLVSSQCGIGSKKHQTVVMEELPQLAKRVLLIQTIREYADTALRLEPLIGDLEDVVFSSGANCVRNMISTKLLTSQVSMDFGPKQEMLSRAIKLMNDIER VLVEIVQSHPQWISLLDSVDARVEKTLAIVRPQIFADHRALLASLGWPPKLSLSKTDGREIVSIPNPLVLMGGDKRELYSKSFLTVCALQHMQTRRESRQ YKSTEPKEHSIGLWAIDELVSPIASRMEYHFSKWDEQPELMFALVYKTTSDFIVGVDDILQPLIDRARLVSYSAKEAWVSATVQLLSGFLVRGIFPVLVE KYKKKETKSDAISSWLHLIDCMIAFDKQMRSLVNSDSCFFLEDSERFEGLSRSLSVLEVFCEMPDWLKLWARIEVKDAWNKLKPEMGDERFWSVNMKDRN DSQIGTESDHFLMSTSQEHKAPAIAEFSLKTIWQLIEKSRSLPAVLPRVQFLRSTACRFMWYFLNVLVFRCKNTEYPADDIGDALTRVCGSINAARYLEF KLKEWSDDIEFLEMRIAERGPEFSGKYSGENACFFYEEINSLGDMQTNWLLEIASVLLHHFETLTWNYTQNKRRFEQRQEEAIKDGGSEIDLVVSVDLVE GLDALRNQLEVLSTSLNAKDFFDLWRSSADGLDHYMYRIIFSNTFQFSGEGIKQFEIDMKALFLVFKPFCVRPEAFFPCILETLKLLTLDKEEANQLRLV LSREGESRARCMQQFCSMIRQLSHDQAVKVLRMRKWLDTYC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08400			RINT-1 / TIP-1 family (.1)		Lus10036104 [exp]	0	1
AT2G46900			unknown protein		Lus10010275 [exp]	3.2	0.9189
AT3G02650			Tetratricopeptide repeat (TPR)...		Lus10013236 [exp]	11.4	0.9185
AT5G06550			unknown protein		Lus10029343 [exp]	12.2	0.9112
AT2G01720			Ribophorin I (.1)		Lus10040410 [exp]	17.4	0.9121
AT3G09630			Ribosomal protein L4/L1 family...		Lus10019904 [exp]	17.8	0.9089
AT1G29900		VEN3, CARB	VENOSA 3, carbamoyl phosphate ...		Lus10016137 [exp]	18.5	0.9080
AT3G57490			Ribosomal protein S5 family pr...		Lus10027358 [exp]	25.3	0.9113
AT1G79220			Mitochondrial transcription te...		Lus10031762 [exp]	25.5	0.8670
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031763 [exp]	26.5	0.9050
AT1G19520		NFD5	NUCLEAR FUSION DEFECTIVE 5, pe...		Lus10035298 [exp]	27.7	0.8961

Compare expression of checked genes

Lus10036104 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.