Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07870 186 / 2e-54 F-box and associated interaction domains-containing protein (.1) AT3G23880 54 / 1e-07 F-box and associated interaction domains-containing protein (.1) AT3G06240 53 / 2e-07 F-box family protein (.1) AT2G02030 52 / 5e-07 F-box family protein (.1) AT4G10190 51 / 7e-07 F-box and associated interaction domains-containing protein (.1) AT4G12560 51 / 8e-07 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT2G34280 50 / 2e-06 F-box and associated interaction domains-containing protein (.1) AT3G20690 47 / 1e-05 F-box and associated interaction domains-containing protein (.1) AT5G10340 47 / 2e-05 F-box family protein (.1) AT4G21240 46 / 4e-05 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026789 [exp] 298 / 9e-101 AT3G07870 102 / 7e-26 F-box and associated interaction domains-containing protein (.1) Lus10006403 [exp] 179 / 9e-53 AT3G07870 362 / 2e-124 F-box and associated interaction domains-containing protein (.1) Lus10012355 [exp] 177 / 3e-51 AT3G07870 393 / 2e-135 F-box and associated interaction domains-containing protein (.1) Lus10012358 [exp] 117 / 1e-28 AT3G07870 181 / 3e-52 F-box and associated interaction domains-containing protein (.1) Lus10012356 [exp] 81 / 5e-17 AT3G07870 126 / 7e-34 F-box and associated interaction domains-containing protein (.1) Lus10032458 [exp] 67 / 6e-12 AT4G12560 120 / 1e-30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10038606 [exp] 64 / 8e-11 AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1) Lus10040338 [exp] 64 / 1e-10 AT4G12560 78 / 1e-15 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10008871 [exp] 62 / 4e-10 AT4G12560 135 / 1e-35 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G223000 [exp] 218 / 1e-66 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1) Potri.014G162600 [exp] 213 / 1e-64 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.008G215901 [exp] 130 / 2e-33 AT3G07870 103 / 3e-24 F-box and associated interaction domains-containing protein (.1) Potri.008G215800 [exp] 126 / 5e-32 AT3G07870 101 / 3e-23 F-box and associated interaction domains-containing protein (.1) Potri.011G037200 [exp] 115 / 4e-28 AT3G07870 134 / 6e-35 F-box and associated interaction domains-containing protein (.1) Potri.011G037312 [exp] 114 / 9e-28 AT3G07870 134 / 3e-35 F-box and associated interaction domains-containing protein (.1) Potri.011G137200 [exp] 100 / 1e-22 AT3G07870 94 / 1e-20 F-box and associated interaction domains-containing protein (.1) Potri.013G053301 [exp] 93 / 1e-20 AT3G07870 258 / 7e-83 F-box and associated interaction domains-containing protein (.1) Potri.008G216000 [exp] 88 / 3e-19 AT1G47340 65 / 9e-12 F-box and associated interaction domains-containing protein (.1) Potri.004G000900 [exp] 88 / 1e-18 AT4G12560 87 / 2e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [flax] [poplar] FBA PF08268 [flax] [poplar] FBA_3 F-box associated domain
Representative CDS sequence Show only first row Show all	>Lus10036105 pacid=23141014 polypeptide=Lus10036105 locus=Lus10036105.g ID=Lus10036105.BGIv1.0 annot-version=v1.0 ATGACAAATCTTCTTGTTAGAAGCGTTACTCTTAATCAATTCCATTTATTTTGCCCCTCACATCACACAACCGCTCTTCCTCGTCATTCAACTTATAGCT CCATGGAATCATCAGACTGCAAAATTCAGAAACTCCCTGAATCCATTTTCCACAGGATACTCTCCAAGCTATCTGTACTAACACTCCTAGACTGCAAACT CATATCCAAATATTGGCTTGCTTCCATCAATGATAAAACTTTCAGTAACACCCACTTTGCTGAAGATGAAACCAGTCTCTTCCTGTTAGCCTTCTCAGAC TGGCCCAGCCCCAAACTTCAGCTCGCCAATATTGATGCTTCCCAGATCCTGCCCAACCTCAAAACACTCAACAAACTTGTTGATGAATCTGTGTTACCGG AGTTTGAACTGGTGGGTTCTTGCAATGGAGTTCTCTGTCTTTACAACACAATTGCTGATGATCCACTCTACATCTGCAACCCATTCTCTAGGATGAATGA TCATTATTATTACAAGGAGTTTCCCAAGCTGAATCTGCAGGTAAATCTGGACACAGTTTGCAGGGTGGTTTTTGGATTTGGATTCCATCCAGGGGAAAAA GAGTACAAGGTAGTCAAAATCGTGTATTACAAGCTGTGGAACTATGACTTCTCTGGGGGGAACCCTGAAGCATTCGTGCTGACTATAGGCAAAGACGATG AGTGGAGGAAACTGGGGAAAATTTCCTACTCGTTGAATGGTCCAACATCTGAAGCACTGGTAGCTGGCAGGCTTCATTGGAGAAGTTACATGTCTCAAGA AGAAGACGATGTTAGATCGAAGACGACCATCGTCTCATTCGACTTGGAAAATGAACATTTCCAGCCCATCCCTGGAATTGCATACCCTTCTTCAAGCCGG ACAGATCACAACCTAGCAAACTTACGAGGTTGCCTTTCTACAGCGGTGTTGAATGGCGATGGAACAACCGACATTTGGGTGATGAAGTGCTACAACATGG AGGAATCTTGGACCAAGGAGTTGGTGATTCCAAGCCATGTCCCTCCTACATACAGGTTGGATATGGTTCCTCCAACTAGAAGGAAGAGAAATGGAATCAC AGGGAGATTATCCAAAGTTTTATACAAGTTCATGGATGGGAGGGTGCTGTTTCTTTACAGGAGCAAATGCCTGGTTATTTACGATCCAGGTAGTGGAGAA TTTGAGGATATGGAGATCCAAGGTCTTCCTCTGGAATTCCAGGCGTTTGTTCATATAGGAACTCTTCTATCACTAGATACAATTTTCCATACCATACAGT AG
AA sequence Show only first row Show all	>Lus10036105 pacid=23141014 polypeptide=Lus10036105 locus=Lus10036105.g ID=Lus10036105.BGIv1.0 annot-version=v1.0 MTNLLVRSVTLNQFHLFCPSHHTTALPRHSTYSSMESSDCKIQKLPESIFHRILSKLSVLTLLDCKLISKYWLASINDKTFSNTHFAEDETSLFLLAFSD WPSPKLQLANIDASQILPNLKTLNKLVDESVLPEFELVGSCNGVLCLYNTIADDPLYICNPFSRMNDHYYYKEFPKLNLQVNLDTVCRVVFGFGFHPGEK EYKVVKIVYYKLWNYDFSGGNPEAFVLTIGKDDEWRKLGKISYSLNGPTSEALVAGRLHWRSYMSQEEDDVRSKTTIVSFDLENEHFQPIPGIAYPSSSR TDHNLANLRGCLSTAVLNGDGTTDIWVMKCYNMEESWTKELVIPSHVPPTYRLDMVPPTRRKRNGITGRLSKVLYKFMDGRVLFLYRSKCLVIYDPGSGE FEDMEIQGLPLEFQAFVHIGTLLSLDTIFHTIQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07870			F-box and associated interacti...		Lus10036105 [exp]	0	1
AT3G55150		ATEXO70H1	exocyst subunit exo70 family p...		Lus10023455 [exp]	3.2	0.8718
AT1G78020			Protein of unknown function (D...		Lus10019672 [exp]	5.9	0.8214
AT2G26910		PEC1, ABCG32, P...	PERMEABLE CUTICLE 1, ATP-bindi...		Lus10043305 [exp]	6.5	0.8516
AT2G20870			cell wall protein precursor, p...		Lus10039801 [exp]	8.2	0.8477
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10005417 [exp]	10.0	0.8398
AT2G20870			cell wall protein precursor, p...		Lus10018569 [exp]	10.5	0.8484
AT1G71680			Transmembrane amino acid trans...		Lus10037052 [exp]	16.6	0.8131
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10036684 [exp]	18.2	0.7638
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10010741 [exp]	20.2	0.7552
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Lus10010587 [exp]	21.0	0.7903

Compare expression of checked genes

Lus10036105 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.