Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60520 438 / 7e-155 Late embryogenesis abundant (LEA) protein-related (.1) AT5G60530 421 / 1e-146 late embryogenesis abundant protein-related / LEA protein-related (.1) AT4G27400 289 / 2e-96 Late embryogenesis abundant (LEA) protein-related (.1) AT5G54370 285 / 1e-94 Late embryogenesis abundant (LEA) protein-related (.1) AT1G54890 281 / 7e-93 Late embryogenesis abundant (LEA) protein-related (.1) AT3G19430 235 / 1e-72 late embryogenesis abundant protein-related / LEA protein-related (.1) AT2G19000 44 / 2e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022578 [exp] 467 / 5e-167 AT5G60520 312 / 2e-106 Late embryogenesis abundant (LEA) protein-related (.1) Lus10031532 [exp] 402 / 2e-141 AT5G60520 426 / 4e-151 Late embryogenesis abundant (LEA) protein-related (.1) Lus10015148 [exp] 404 / 8e-141 AT5G60520 428 / 2e-150 Late embryogenesis abundant (LEA) protein-related (.1) Lus10015149 [exp] 401 / 1e-139 AT5G60520 429 / 1e-150 Late embryogenesis abundant (LEA) protein-related (.1) Lus10031297 [exp] 301 / 2e-100 AT5G54370 356 / 2e-122 Late embryogenesis abundant (LEA) protein-related (.1) Lus10033540 [exp] 276 / 5e-91 AT5G54370 396 / 2e-138 Late embryogenesis abundant (LEA) protein-related (.1) Lus10017577 [exp] 268 / 1e-87 AT5G54370 389 / 2e-135 Late embryogenesis abundant (LEA) protein-related (.1) Lus10038588 [exp] 267 / 2e-87 AT5G54370 481 / 6e-172 Late embryogenesis abundant (LEA) protein-related (.1) Lus10026972 [exp] 265 / 1e-86 AT5G54370 479 / 2e-171 Late embryogenesis abundant (LEA) protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G012500 [exp] 475 / 1e-169 AT5G60520 459 / 3e-163 Late embryogenesis abundant (LEA) protein-related (.1) Potri.009G012600 [exp] 443 / 3e-156 AT5G60520 481 / 2e-171 Late embryogenesis abundant (LEA) protein-related (.1) Potri.012G145400 [exp] 336 / 4e-114 AT5G54370 388 / 1e-134 Late embryogenesis abundant (LEA) protein-related (.1) Potri.011G127900 [exp] 282 / 1e-93 AT5G54370 429 / 1e-151 Late embryogenesis abundant (LEA) protein-related (.1) Potri.009G145700 [exp] 235 / 2e-73 AT3G19430 379 / 4e-126 late embryogenesis abundant protein-related / LEA protein-related (.1) Potri.009G097400 [exp] 234 / 4e-70 AT3G19430 402 / 5e-131 late embryogenesis abundant protein-related / LEA protein-related (.1) Potri.001G405650 [exp] 195 / 5e-60 AT5G54370 350 / 7e-121 Late embryogenesis abundant (LEA) protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06830 [flax] [poplar] Root_cap Root cap
Representative CDS sequence Show only first row Show all	>Lus10036107 pacid=23141201 polypeptide=Lus10036107 locus=Lus10036107.g ID=Lus10036107.BGIv1.0 annot-version=v1.0 ATGCAAGGCTTTTTGGCTCTCTTGTCTTTGTCTTTGTTCCTTGCATTGGGTTTGAGACAAGTCTCTTCTCAGTCCAGTAATGGCGGATACTACAGGAACT TGGATCCTGCCAGAACCAATTATAAAGTGCTGGACAGAACCCCTTCAGGTCACGAACAAGTTTACTGTTTAGCCAGAGGATACTGCCAAGGCAAGACCCT CACTTGCCCAGATCAATGCATCGAAAGGAAGCCTAAGCGCAACAGGAAGAACAAGGGTTGCTACATTGACTGCAGCAGCAAATGTGAAGTCACTTGCAAA TATAGAAAGCCAAACTGCAATGGCTACGGCTCGCTTTGCTACGATCCTCGGTTCGTAGGAGGGGATGGAGTGATGTTCTACTTCCACGGAGCTAAAGGAG GGAACTTTGCCATTGTCTCAGACCAGACATTCCAAATCAATGCACATTTCATTGGAACCAGACCAACTGGAAGGACCAGAGATTACACCTGGGTTCAGGC TCTGGCTATCATGTTCGAAACCAACACATTGGTCATTGCCGCCAAGAAAGTCCCACGCTGGGATGACAAGGTCGACGCTCTCATCGTCAAGTGGGACGGA GAGACCGTCACCATCCCAACCGGAGGTGATTCTGAGTGGAGATCTTCTACAGACAGCGTTGTTGTAGAAAGAACTGACGATGTCAACACTGTGAAGGTGA CGGTTCAACACATGGGGGAGCTGTCCATAAGGATCAGGCCAATTGGAGAGGAAGAGAACAGAGTTCATAACTATCAACTTCCAGATGGAGATGCGTTTGC TCATCTGGAGACGCAGTTCAAGTTCTATAATCTGACGGATGACGTGGAAGGAGTTTTAGGGAAGACTTACAGGCCGGATTATTCGAGTCCGGTGAAAGTT GGAGTGCCAATGCCGATGATGGGCGGTGAAGACAAGTACGAGACTCCATCACTCTACTCAACTTTCTGCAGGCTATGCAAGTTCCAGAGAGATGGCCCCA AGTTTGCAGCTGCTTCTGTTTCTGGAGGAGTACTGTCTGAATAG
AA sequence Show only first row Show all	>Lus10036107 pacid=23141201 polypeptide=Lus10036107 locus=Lus10036107.g ID=Lus10036107.BGIv1.0 annot-version=v1.0 MQGFLALLSLSLFLALGLRQVSSQSSNGGYYRNLDPARTNYKVLDRTPSGHEQVYCLARGYCQGKTLTCPDQCIERKPKRNRKNKGCYIDCSSKCEVTCK YRKPNCNGYGSLCYDPRFVGGDGVMFYFHGAKGGNFAIVSDQTFQINAHFIGTRPTGRTRDYTWVQALAIMFETNTLVIAAKKVPRWDDKVDALIVKWDG ETVTIPTGGDSEWRSSTDSVVVERTDDVNTVKVTVQHMGELSIRIRPIGEEENRVHNYQLPDGDAFAHLETQFKFYNLTDDVEGVLGKTYRPDYSSPVKV GVPMPMMGGEDKYETPSLYSTFCRLCKFQRDGPKFAAASVSGGVLSE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60520			Late embryogenesis abundant (L...		Lus10036107 [exp]	0	1
AT1G06930			unknown protein		Lus10024185 [exp]	1.0	0.9827
AT4G00080		UNE11	unfertilized embryo sac 11, Pl...		Lus10030292 [exp]	2.4	0.9735
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10001429 [exp]	4.5	0.9759
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10038959 [exp]	4.9	0.9733
AT5G51480		SKS2	SKU5 similar 2 (.1)		Lus10038920 [exp]	5.9	0.9664
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10011052 [exp]	5.9	0.9724
AT3G24750			unknown protein		Lus10038162 [exp]	6.5	0.9715
AT1G62770			Plant invertase/pectin methyle...		Lus10032230 [exp]	6.9	0.9648
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10003022 [exp]	12.4	0.9529
AT3G61920			unknown protein		Lus10023060 [exp]	13.0	0.9603

Compare expression of checked genes

Lus10036107 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.