Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28470 645 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT4G36360 431 / 3e-142 BGAL3 beta-galactosidase 3 (.1.2) AT3G13750 423 / 2e-139 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT2G32810 413 / 4e-135 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT5G20710 358 / 2e-114 BGAL7 beta-galactosidase 7 (.1) AT1G77410 337 / 1e-106 BGAL16 beta-galactosidase 16 (.1) AT5G63810 330 / 1e-104 BGAL10 beta-galactosidase 10 (.1) AT3G52840 322 / 1e-101 BGAL2 beta-galactosidase 2 (.1) AT5G56870 313 / 2e-98 BGAL4 beta-galactosidase 4 (.1) AT1G45130 311 / 2e-97 BGAL5 beta-galactosidase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000271 [exp] 1016 / 0 AT2G28470 1046 / 0.0 beta-galactosidase 8 (.1.2) Lus10006733 [exp] 435 / 1e-143 AT2G28470 939 / 0.0 beta-galactosidase 8 (.1.2) Lus10041798 [exp] 425 / 7e-140 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2) Lus10000701 [exp] 424 / 2e-139 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10025980 [exp] 424 / 2e-139 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2) Lus10015625 [exp] 424 / 2e-139 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10037644 [exp] 422 / 1e-138 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10022645 [exp] 422 / 2e-138 AT5G63810 1058 / 0.0 beta-galactosidase 10 (.1) Lus10003343 [exp] 419 / 4e-137 AT5G63810 1054 / 0.0 beta-galactosidase 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G012400 [exp] 699 / 0 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.011G044300 [exp] 475 / 2e-159 AT2G28470 993 / 0.0 beta-galactosidase 8 (.1.2) Potri.006G144500 [exp] 439 / 1e-145 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.007G018100 [exp] 431 / 2e-142 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.007G099800 [exp] 427 / 5e-141 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1) Potri.005G232600 [exp] 413 / 2e-135 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.003G038500 [exp] 408 / 1e-133 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G200400 [exp] 403 / 1e-131 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.017G057900 [exp] 398 / 3e-129 AT2G32810 1351 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2) Potri.001G025701 [exp] 364 / 7e-117 AT5G20710 1123 / 0.0 beta-galactosidase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02140 [flax] [poplar] Gal_Lectin Galactose binding lectin domain
Representative CDS sequence Show only first row Show all	>Lus10036108 pacid=23141028 polypeptide=Lus10036108 locus=Lus10036108.g ID=Lus10036108.BGIv1.0 annot-version=v1.0 ATGAACTATTTTCGGGACCTCCATCTAACCCAGTACGTCCACTTGTTCACATTGATCGCAGGACTCCTTAGACAACCTAAGTGGGGCCACCTAAAGGATC TGCATAAGGCTTTAAAACTTTCTCAAGATGCCCTGCTGGCAACTGACCCGGCTACAACTTCACTCGGTTCGACCGTTGAGGCAACTGCTTATAAATCGGG TTCTCTGTGTGCTGCCTTTCTTGCAAATACTGGTAAAACTGACAGGACTGTGAGTTTCTGGAACAATTCATATTTGTTGCCTGCATGGTCGGTCAGTATC TTACCAGACTGCAAGACTGTTGCGTTTAACACTGCAAAGATAAACACTGTGACTGTGGTTCCAAGCTTCACTCGTACATCTATCAATGATGTCTCCTCTG AGTGGAGCTGGATAGATGAACCTGTGGGTATCACAAAGGACAGTGCATTCACGAAACCAGGACTTCAAGAGCAGATAAATACCACAGCTGATCAGAGTGA CTACCTTTGGTACTCATTAAGCATTAATAGTGAAGGTGGGGATGGATCCCAAATTCACTTAGAATCTCTTGGCCATGCGATTCACACTTTTGTAAATGGG AAATTGGCTGGCACAGCAACAGGAGACAGCAACAACGCTAAGATTTCACAGGACATTGCAGTCACACTTGTACCTGGGAAGAACACCATCGATCTCTTGA GTTTAACAGTGGGACTGCAGAACTATGGGGCCTTTTTTGACTTAAAAGGTGCTGGAGTTACTGGCCCAGTAGTGTTGAAGCTGAAAAATGGTTCCACCAT TGATGTCTCTGCACAGATGTGGACTTATCAGATTGGCCTCAAAGGTGAGGATTCGGGACTGCCTAGTGGAACTTCTTCTCAGTGGGTTTCACAGTCGTCT TTGCCTACAATGAAACCTCTATTATGGTACAAGACGAGTTTCGATAGTCCTGATGGTGATGGGCCACTGGCGATTGACTTCACCGGGATGGGCAAGGGAG AGGCTTGGGTGAATGGACAAAGCATTGGACGATATTGGCCGACTAATATAGCACCCCCTAGTGGTTGCACTGATTCTTGTGATTACAGAGGATCTTATGG TGCAAACAAATGCCTCAAGAACTGTGGAAAGCCTTCTCAGACATTATACCACGTACCCCGCTCTTGGCTGAAATCAAGCGGAAACACTCTGGTATTATTC GAAGAAAATGGCGGGGACCCGACCAAGATAGCATTTGCTGCTGCAACGAACAAAGTTGGAAGTGTTTGTGCTCAGGTATCAGAGACACATCCATCTCCAG TAGACAACTGGAGACTAAATTCGGATACAGAAACTGAATCGGGACCAGTGCTATCACTATTTTGCTCACATCCCAACCAAGTGATTTCTTCAATCAAGTT TGCAAGCTATGGTACCCCTCAAGGAACCTGTGGGAGCTTCAGAAATGGAGATTGCCACAGCAAGAATACTCTATCCATTATAGAAAAGGCTTGCATTGGA TCAAAGAGCTGTAGCGTTGAAGTATCAGGGGGCACATTTGGTGAACCTTGTGGCCGAGTTCGTAAGAGTTTGGCAGTGGAAGCATCCTGTACCGCTGCTG CACATTGA
AA sequence Show only first row Show all	>Lus10036108 pacid=23141028 polypeptide=Lus10036108 locus=Lus10036108.g ID=Lus10036108.BGIv1.0 annot-version=v1.0 MNYFRDLHLTQYVHLFTLIAGLLRQPKWGHLKDLHKALKLSQDALLATDPATTSLGSTVEATAYKSGSLCAAFLANTGKTDRTVSFWNNSYLLPAWSVSI LPDCKTVAFNTAKINTVTVVPSFTRTSINDVSSEWSWIDEPVGITKDSAFTKPGLQEQINTTADQSDYLWYSLSINSEGGDGSQIHLESLGHAIHTFVNG KLAGTATGDSNNAKISQDIAVTLVPGKNTIDLLSLTVGLQNYGAFFDLKGAGVTGPVVLKLKNGSTIDVSAQMWTYQIGLKGEDSGLPSGTSSQWVSQSS LPTMKPLLWYKTSFDSPDGDGPLAIDFTGMGKGEAWVNGQSIGRYWPTNIAPPSGCTDSCDYRGSYGANKCLKNCGKPSQTLYHVPRSWLKSSGNTLVLF EENGGDPTKIAFAAATNKVGSVCAQVSETHPSPVDNWRLNSDTETESGPVLSLFCSHPNQVISSIKFASYGTPQGTCGSFRNGDCHSKNTLSIIEKACIG SKSCSVEVSGGTFGEPCGRVRKSLAVEASCTAAAH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Lus10036108 [exp]	0	1
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Lus10036109 [exp]	1.0	0.9418
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Lus10000271 [exp]	1.4	0.9072
AT1G09580			emp24/gp25L/p24 family/GOLD fa...		Lus10001615 [exp]	2.4	0.8069
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10026455 [exp]	12.4	0.7080
AT5G28840		GME	"GDP-D-mannose 3',5'-epimerase...		Lus10020247 [exp]	15.9	0.7582
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10013503 [exp]	22.6	0.7360
AT1G27620			HXXXD-type acyl-transferase fa...		Lus10024278 [exp]	25.5	0.7130
AT5G55470		ATNHX3	Na+/H+ \(sodium hydrogen\) exc...		Lus10016583 [exp]	28.7	0.7020
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10000690 [exp]	36.7	0.6980
AT5G20680		TBL16	TRICHOME BIREFRINGENCE-LIKE 16...		Lus10027651 [exp]	36.9	0.7147

Compare expression of checked genes

Lus10036108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.