Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28470 421 / 2e-142 BGAL8 beta-galactosidase 8 (.1.2) AT3G13750 375 / 2e-124 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT5G20710 366 / 4e-121 BGAL7 beta-galactosidase 7 (.1) AT4G26140 359 / 1e-120 BGAL12 beta-galactosidase 12 (.1.2) AT2G32810 363 / 7e-120 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT1G45130 355 / 4e-118 BGAL5 beta-galactosidase 5 (.1) AT4G36360 358 / 1e-117 BGAL3 beta-galactosidase 3 (.1.2) AT3G52840 354 / 1e-117 BGAL2 beta-galactosidase 2 (.1) AT1G31740 355 / 3e-117 BGAL15 beta-galactosidase 15 (.1) AT5G56870 352 / 8e-117 BGAL4 beta-galactosidase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000271 [exp] 440 / 8e-150 AT2G28470 1046 / 0.0 beta-galactosidase 8 (.1.2) Lus10000701 [exp] 373 / 2e-123 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10037644 [exp] 370 / 3e-122 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10015625 [exp] 368 / 2e-121 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10024292 [exp] 364 / 2e-121 AT1G45130 1128 / 0.0 beta-galactosidase 5 (.1) Lus10006009 [exp] 360 / 7e-120 AT4G26140 1080 / 0.0 beta-galactosidase 12 (.1.2) Lus10011237 [exp] 364 / 1e-119 AT2G28470 901 / 0.0 beta-galactosidase 8 (.1.2) Lus10006733 [exp] 363 / 1e-119 AT2G28470 939 / 0.0 beta-galactosidase 8 (.1.2) Lus10040557 [exp] 359 / 2e-119 AT4G26140 1001 / 0.0 beta-galactosidase 12 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G012400 [exp] 447 / 2e-152 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.011G044300 [exp] 381 / 1e-126 AT2G28470 993 / 0.0 beta-galactosidase 8 (.1.2) Potri.001G025701 [exp] 378 / 9e-126 AT5G20710 1123 / 0.0 beta-galactosidase 7 (.1) Potri.006G144500 [exp] 374 / 6e-124 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.003G038500 [exp] 371 / 8e-123 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.005G232600 [exp] 370 / 2e-122 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.001G200400 [exp] 369 / 4e-122 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G025800 [exp] 363 / 6e-120 AT5G20710 1097 / 0.0 beta-galactosidase 7 (.1) Potri.004G159800 [exp] 358 / 3e-119 AT4G36360 1137 / 0.0 beta-galactosidase 3 (.1.2) Potri.007G018100 [exp] 360 / 1e-118 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01301 [flax] [poplar] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Lus10036109 pacid=23141100 polypeptide=Lus10036109 locus=Lus10036109.g ID=Lus10036109.BGIv1.0 annot-version=v1.0 ATGAAACGAAGTAGTGGAGGCCGGAGGAGAGAGATTGTGGTGGCGGTGGGGGTGCTTTTGGGGCTGGCGCTGGCTGTAGCAACGGCATTTGGAGCAAACG TGTCGTACGATCACAGGGCGTTGGTCATTGATGGCAAACGGCGGATGTTGATCTCTGGCTCTATTCATTACCCTCGAAGCACTCCTGACATGTGGCCGGA CCTTATACAGAAATCCAAGGATGGAGGAGTGGATGTGATCGAGACCTACGTTTTCTGGAACATACACGAGCCAGTTCAAAATCAGGCAATGGCAGAAGCC GGACTATACGTTCATCTCCGAATCGGTCCATATGTGTGCGCCGAGTGGAACTATGGTGGCTTTCCTCTCTGGCTGCATTTTATTCCCGGAATCAAGCTAC GAACTGACAACGAGCCGTATAAGACTGAAATGAAGCGATTCACGGCAAAGATTGTGGATATGATGAAGAAGGAAAAACTGTATGCGTCTCAAGGAGGACC AATCATATTATCGCAGATTGAGAATGAATATGGCAACGTTGATGCCGCTTATGGCTCTGCGGCTAAACCCTACATCAACTGGGCAGCAAACATGGCAGAG TCCCTCAACACTGGAGTGCCCTGGGTTATGTGCCAGCAAGGAGATGCTCCGGATCCCATTTCCTGTGGTGGTGCTGTGCCCTACAGACCTGTGGAAGACC TTGCATTTTCTGTGGCACGCTTTTTCCAGTTAGGGGGGACTTTCCAAAATTATTATATGTACCATGGTGGGACTAACTTTGGAAGGAGTTCCGGTGGACC CTTTATCGCCACTAGTTATGATTATGATGCCCCCCTTGACGAATATGGTAAGGCCTGTGGTTCTGCAATGGCGTTTCACAGACAAAGCCAATAG
AA sequence Show only first row Show all	>Lus10036109 pacid=23141100 polypeptide=Lus10036109 locus=Lus10036109.g ID=Lus10036109.BGIv1.0 annot-version=v1.0 MKRSSGGRRREIVVAVGVLLGLALAVATAFGANVSYDHRALVIDGKRRMLISGSIHYPRSTPDMWPDLIQKSKDGGVDVIETYVFWNIHEPVQNQAMAEA GLYVHLRIGPYVCAEWNYGGFPLWLHFIPGIKLRTDNEPYKTEMKRFTAKIVDMMKKEKLYASQGGPIILSQIENEYGNVDAAYGSAAKPYINWAANMAE SLNTGVPWVMCQQGDAPDPISCGGAVPYRPVEDLAFSVARFFQLGGTFQNYYMYHGGTNFGRSSGGPFIATSYDYDAPLDEYGKACGSAMAFHRQSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Lus10036109 [exp]	0	1
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Lus10036108 [exp]	1.0	0.9418
AT1G09580			emp24/gp25L/p24 family/GOLD fa...		Lus10001615 [exp]	1.7	0.8411
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Lus10000271 [exp]	2.0	0.8474
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10013035 [exp]	18.0	0.7306
AT1G19110			inter-alpha-trypsin inhibitor ...		Lus10013159 [exp]	20.9	0.7552
AT5G55470		ATNHX3	Na+/H+ \(sodium hydrogen\) exc...		Lus10016583 [exp]	31.3	0.7161
AT2G35100		ARAD1	ARABINAN DEFICIENT 1, Exostosi...		Lus10036219 [exp]	31.8	0.7555
AT1G64300			Protein kinase family protein ...		Lus10036439 [exp]	37.7	0.6868
AT1G27620			HXXXD-type acyl-transferase fa...		Lus10024278 [exp]	38.2	0.7174
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10009228 [exp]	39.4	0.7261

Compare expression of checked genes

Lus10036109 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.