Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07980 104 / 2e-27 CCAAT NF-YC10 "nuclear factor Y, subunit C10", nuclear factor Y, subunit C10 (.1) AT5G19490 47 / 4e-06 CCAAT Histone superfamily protein (.1) AT3G48590 45 / 1e-05 CCAAT NF-YC1, ATHAP5A, HAP5A "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) AT5G63470 45 / 1e-05 CCAAT NF-YC4 "nuclear factor Y, subunit C4", nuclear factor Y, subunit C4 (.1.2) AT3G12480 44 / 4e-05 CCAAT NF-YC11 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) AT1G08970 42 / 0.0002 CCAAT NF-YC9, HAP5C "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) AT1G54830 42 / 0.0002 CCAAT NF-YC3 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3) AT5G50480 41 / 0.0004 CCAAT NF-YC6 "nuclear factor Y, subunit C6", nuclear factor Y, subunit C6 (.1) AT5G50490 39 / 0.0008 CCAAT NF-YC5 "nuclear factor Y, subunit C5", nuclear factor Y, subunit C5 (.1) AT1G56170 40 / 0.0009 CCAAT NF-YC2, ATHAP5B, HAP5B "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026780 [exp] 50 / 5e-07 AT5G19490 189 / 1e-58 Histone superfamily protein (.1) Lus10030832 [exp] 47 / 2e-06 AT5G43250 147 / 3e-46 "nuclear factor Y, subunit C13", nuclear factor Y, subunit C13 (.1) Lus10008013 [exp] 45 / 6e-06 AT1G54830 112 / 5e-32 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3) Lus10022444 [exp] 45 / 2e-05 AT3G48590 300 / 1e-102 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Lus10016750 [exp] 45 / 2e-05 AT3G48590 298 / 1e-102 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Lus10024515 [exp] 43 / 3e-05 AT1G56170 119 / 6e-35 "nuclear factor Y, subunit C2", nuclear factor Y, subunit C2 (.1.2) Lus10029939 [exp] 43 / 0.0001 AT1G08970 243 / 3e-81 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10004468 [exp] 43 / 0.0001 AT1G08970 249 / 2e-83 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Lus10030657 [exp] 41 / 0.0002 AT5G43250 142 / 2e-44 "nuclear factor Y, subunit C13", nuclear factor Y, subunit C13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G012300 [exp] 127 / 6e-36 AT1G07980 117 / 7e-33 "nuclear factor Y, subunit C10", nuclear factor Y, subunit C10 (.1) Potri.003G192100 [exp] 48 / 2e-06 AT3G12480 224 / 4e-72 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Potri.012G098500 [exp] 46 / 9e-06 AT3G48590 265 / 4e-90 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Potri.001G033200 [exp] 46 / 1e-05 AT3G12480 221 / 7e-71 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Potri.001G225400 [exp] 46 / 1e-05 AT3G12480 180 / 1e-54 "nuclear factor Y, subunit C11", nuclear factor Y, subunit C11 (.1) Potri.003G124500 [exp] 44 / 1e-05 AT1G54830 116 / 2e-33 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3) Potri.015G097400 [exp] 45 / 2e-05 AT3G48590 314 / 3e-109 "nuclear factor Y, subunit C1", nuclear factor Y, subunit C1 (.1) Potri.013G025000 [exp] 43 / 7e-05 AT1G08970 252 / 6e-85 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.005G035800 [exp] 42 / 0.0002 AT1G08970 246 / 5e-82 "nuclear factor Y, subunit C9", HEME ACTIVATED PROTEIN 5C, nuclear factor Y, subunit C9 (.1.2.3.4) Potri.001G106900 [exp] 40 / 0.0002 AT1G54830 112 / 6e-32 "nuclear factor Y, subunit C3", nuclear factor Y, subunit C3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00808 [flax] [poplar] CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Representative CDS sequence Show only first row Show all	>Lus10036110 pacid=23141083 polypeptide=Lus10036110 locus=Lus10036110.g ID=Lus10036110.BGIv1.0 annot-version=v1.0 ATGGCGTCCTCTAAAAGTTCCAAGAAGGAAGAAGACAACAAGATGCAGAAGAACGGCAAGGCACTAGGGATCTCTAAGTCTCTGACCAAGGGGAAGAAAT CGTCGTTGGCATCGAAGTCGAAATCGAAATCTTCTCAGAAAAAGACGACTCCGGTGAAGGCCACGAATAAGGCGAAAACTCCAACGAAACCGAAGAAGGA GGAGAACAGCAAGAAGAAGAAGGAGCCGGAGCCGGAGCCAGAACCGGAGGAGCTCGTGGTTCCTTCCTCGAGCTGCGACTCCGAGGCGGGGGGAGGAGAA GCACGTGTTGATGAGGCCAAGGGTCGGAGCAGAAATTCCATGAGCTCCAAGGCCGAGAATGGAAAAATGAAGAAACAGAATGTGAGGGATGAAATCAATG GAGATGAAGACGGCAATCAAGTAAACGACGGGACAATGTGTAGGTTCCCGATGGCCAGGATACGAAGGATAATGACGAGCGAAACACCGAATTTACAAAC TGGTCTGGAGGGCCAAGATGTGGTTTTTGTCGTCAATAGAGCCACTGAGTTGTTTTTGGAGAAATTTGCTGAACAAGGACATCGTTCGGCAGTTAATGAT CGAAAGAAGACGCTTGATTACAAACACTTAGCAACAGTTGTTAGCCAAAGCAAGGAGTTTGATTTTCTTTCAGATTTTGTGCCTCTCAAGGTTAAAGCTT CGGATGCATTAGAAGCAATAAAATCAGCTGAGAAGCAGCAGCAAGGATAA
AA sequence Show only first row Show all	>Lus10036110 pacid=23141083 polypeptide=Lus10036110 locus=Lus10036110.g ID=Lus10036110.BGIv1.0 annot-version=v1.0 MASSKSSKKEEDNKMQKNGKALGISKSLTKGKKSSLASKSKSKSSQKKTTPVKATNKAKTPTKPKKEENSKKKKEPEPEPEPEELVVPSSSCDSEAGGGE ARVDEAKGRSRNSMSSKAENGKMKKQNVRDEINGDEDGNQVNDGTMCRFPMARIRRIMTSETPNLQTGLEGQDVVFVVNRATELFLEKFAEQGHRSAVND RKKTLDYKHLATVVSQSKEFDFLSDFVPLKVKASDALEAIKSAEKQQQG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07980	CCAAT	NF-YC10	"nuclear factor Y, subunit C10...		Lus10036110 [exp]	0	1
AT5G64813		LIP1	Light Insensitive Period1, Ras...		Lus10006805 [exp]	6.0	0.7645
AT5G50740			Heavy metal transport/detoxifi...		Lus10038785 [exp]	8.5	0.7661
AT2G14045			unknown protein		Lus10022007 [exp]	8.7	0.7369
AT3G52770		ZPR3	LITTLE ZIPPER 3, protein bindi...		Lus10017055 [exp]	12.4	0.7266
AT4G38370			Phosphoglycerate mutase family...		Lus10023935 [exp]	14.7	0.7235
AT2G36410			Family of unknown function (DU...		Lus10014379 [exp]	22.3	0.7313
AT5G54490		PBP1	pinoid-binding protein 1 (.1)		Lus10036734 [exp]	22.9	0.7490
AT4G01790			Ribosomal protein L7Ae/L30e/S1...		Lus10007191 [exp]	25.4	0.7356
AT5G11340			Acyl-CoA N-acyltransferases (N...		Lus10013120 [exp]	35.6	0.7256
AT5G28910			unknown protein		Lus10027959 [exp]	36.8	0.6890

Compare expression of checked genes

Lus10036110 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.