Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60490 172 / 4e-53 FLA12 FASCICLIN-like arabinogalactan-protein 12 (.1) AT5G03170 166 / 7e-51 ATFLA11, FLA11, IRX13 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) AT5G44130 116 / 3e-31 FLA13 FASCICLIN-like arabinogalactan protein 13 precursor (.1) AT1G03870 111 / 2e-29 FLA9 FASCICLIN-like arabinoogalactan 9 (.1) AT2G20520 100 / 2e-25 FLA6 FASCICLIN-like arabinogalactan 6 (.1) AT2G04780 88 / 1e-20 FLA7 FASCICLIN-like arabinoogalactan 7 (.1.2) AT3G46550 71 / 9e-14 FLA4, SOS5 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) AT4G12730 56 / 9e-09 FLA2 FASCICLIN-like arabinogalactan 2 (.1) AT3G60900 54 / 4e-08 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1) AT2G45470 54 / 4e-08 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002984 [exp] 319 / 2e-110 AT5G03170 192 / 1e-60 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10002979 [exp] 210 / 2e-68 AT5G60490 143 / 1e-42 FASCICLIN-like arabinogalactan-protein 12 (.1) Lus10036111 [exp] 203 / 4e-65 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10002978 [exp] 199 / 1e-63 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036113 [exp] 192 / 3e-60 AT5G03170 173 / 6e-53 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10002985 [exp] 186 / 3e-58 AT5G60490 180 / 4e-56 FASCICLIN-like arabinogalactan-protein 12 (.1) Lus10036114 [exp] 172 / 1e-52 AT5G03170 191 / 3e-60 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10026499 [exp] 159 / 4e-48 AT5G03170 291 / 5e-100 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10019929 [exp] 159 / 5e-48 AT5G03170 295 / 2e-101 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G151432 [exp] 231 / 1e-75 AT5G60490 167 / 6e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.019G121100 [exp] 228 / 1e-74 AT5G60490 168 / 2e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G014200 [exp] 228 / 1e-74 AT5G60490 167 / 6e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.019G123200 [exp] 222 / 2e-72 AT5G60490 165 / 4e-50 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151366 [exp] 221 / 6e-72 AT5G60490 167 / 7e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151500 [exp] 221 / 8e-72 AT5G60490 167 / 4e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151300 [exp] 220 / 1e-71 AT5G03170 167 / 4e-51 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Potri.019G121200 [exp] 219 / 3e-71 AT5G03170 166 / 2e-50 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Potri.015G129400 [exp] 209 / 2e-67 AT5G60490 206 / 2e-66 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.012G127900 [exp] 208 / 3e-67 AT5G60490 207 / 6e-67 FASCICLIN-like arabinogalactan-protein 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [flax] [poplar] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Lus10036112 pacid=23141182 polypeptide=Lus10036112 locus=Lus10036112.g ID=Lus10036112.BGIv1.0 annot-version=v1.0 ATGGCGAAATTCCTCTGCCTCCTCTTCTGCCTAGTCCACGTGGCCACAGCACAATCCCCAGCGTCATCCCCAACAAAATCCCCACCAATAATAACAAAGC CACCAGCATCCTCCCCAACATCTCCAACCAACGTGACAAAAGTACTTGAAAACGCAGGGCACTTCAACATCTTCATTCGCCTCCTTAGAGCTACACAAGA AGACAACCACTTGCTAACCCTCCTCAATAACTCCAACAACGGCGCCACCATCTTTGCACCTACTGATTCTGCATTCTCCTCCCTCAAATCCGGAACTCTC AATACTTTATCCGACGACGCTAAATCCGAGCTTGTCAAGTTCCACGTCATCCCCACCTTCATCTCCTCTTCTCAGTTTCAGACTGTCAGTAACCCAATTG CTACCGAGGCAGGTTCCGGCAGCCGAGTTTCGCTTAATGTCACGTCTTATGGCGATTCTGTCAACATCAGCACTGGCCTCACTAACACAAGCATTTCTGG GAATGTTTACTCTGACGATCAGTTGGCTGTTTATAAGTTGGACAAGGTGTTGCTCCCCATGGATGTCTTTGCCGCCAAGCCAATTGCGCCGGCGCCGGCT CCGGAAGTATTGGAGAAGCCCAATAAGAAGAAGAGTCCCCCTGCTGCTGAGGAACAGGGTAGCTCCCCTGTTGTTCAGGTGGATACCTCCGGTGGTGGTT CTGGAATTTGGGCGGACAAGGCGACGGTGGCATCTACTATTGGTGTAGCTTTTGCGGTGGCTTTTTTAATGTGA
AA sequence Show only first row Show all	>Lus10036112 pacid=23141182 polypeptide=Lus10036112 locus=Lus10036112.g ID=Lus10036112.BGIv1.0 annot-version=v1.0 MAKFLCLLFCLVHVATAQSPASSPTKSPPIITKPPASSPTSPTNVTKVLENAGHFNIFIRLLRATQEDNHLLTLLNNSNNGATIFAPTDSAFSSLKSGTL NTLSDDAKSELVKFHVIPTFISSSQFQTVSNPIATEAGSGSRVSLNVTSYGDSVNISTGLTNTSISGNVYSDDQLAVYKLDKVLLPMDVFAAKPIAPAPA PEVLEKPNKKKSPPAAEEQGSSPVVQVDTSGGGSGIWADKATVASTIGVAFAVAFLM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036112 [exp]	0	1
AT5G44670			Domain of unknown function (DU...		Lus10036247 [exp]	1.4	0.9703
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10002984 [exp]	2.4	0.9637
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036113 [exp]	2.4	0.9643
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10037377 [exp]	3.5	0.9499
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Lus10002979 [exp]	3.5	0.9464
AT3G45230			hydroxyproline-rich glycoprote...		Lus10022582 [exp]	3.7	0.9451
AT5G44670			Domain of unknown function (DU...		Lus10038387 [exp]	5.0	0.9466
AT1G28280			VQ motif-containing protein (....		Lus10041929 [exp]	5.2	0.9313
AT5G10770			Eukaryotic aspartyl protease f...		Lus10020100 [exp]	5.7	0.9195
AT1G49230			RING/U-box superfamily protein...		Lus10005818 [exp]	6.9	0.9342

Compare expression of checked genes

Lus10036112 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.