Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03170 150 / 2e-44 ATFLA11, FLA11, IRX13 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) AT5G60490 145 / 1e-42 FLA12 FASCICLIN-like arabinogalactan-protein 12 (.1) AT2G20520 107 / 3e-28 FLA6 FASCICLIN-like arabinogalactan 6 (.1) AT5G44130 103 / 1e-26 FLA13 FASCICLIN-like arabinogalactan protein 13 precursor (.1) AT1G03870 100 / 2e-25 FLA9 FASCICLIN-like arabinoogalactan 9 (.1) AT2G04780 82 / 1e-18 FLA7 FASCICLIN-like arabinoogalactan 7 (.1.2) AT3G60900 67 / 1e-12 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1) AT3G46550 66 / 4e-12 FLA4, SOS5 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) AT2G45470 64 / 9e-12 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1) AT4G12730 53 / 4e-08 FLA2 FASCICLIN-like arabinogalactan 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007404 [exp] 317 / 4e-109 AT5G60490 142 / 6e-41 FASCICLIN-like arabinogalactan-protein 12 (.1) Lus10002978 [exp] 165 / 3e-50 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10002985 [exp] 164 / 1e-49 AT5G60490 180 / 4e-56 FASCICLIN-like arabinogalactan-protein 12 (.1) Lus10036111 [exp] 161 / 6e-49 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036113 [exp] 161 / 2e-48 AT5G03170 173 / 6e-53 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036114 [exp] 157 / 6e-47 AT5G03170 191 / 3e-60 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036112 [exp] 145 / 2e-42 AT5G03170 197 / 1e-62 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10019929 [exp] 141 / 4e-41 AT5G03170 295 / 2e-101 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10026499 [exp] 140 / 1e-40 AT5G03170 291 / 5e-100 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G320800 [exp] 199 / 6e-64 AT5G60490 189 / 5e-60 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.015G129400 [exp] 174 / 3e-54 AT5G60490 206 / 2e-66 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.012G127900 [exp] 168 / 1e-51 AT5G60490 207 / 6e-67 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.004G210600 [exp] 161 / 1e-48 AT5G60490 188 / 5e-59 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.015G013300 [exp] 160 / 3e-48 AT5G60490 176 / 3e-54 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151366 [exp] 159 / 9e-48 AT5G60490 167 / 7e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.012G015032 [exp] 159 / 9e-48 AT5G60490 179 / 2e-55 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151300 [exp] 158 / 3e-47 AT5G03170 167 / 4e-51 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Potri.012G014966 [exp] 157 / 3e-47 AT5G60490 179 / 1e-55 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G014200 [exp] 157 / 3e-47 AT5G60490 167 / 6e-51 FASCICLIN-like arabinogalactan-protein 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [flax] [poplar] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Lus10036115 pacid=23141037 polypeptide=Lus10036115 locus=Lus10036115.g ID=Lus10036115.BGIv1.0 annot-version=v1.0 ATGATGAAAATGCAATGGCAAACTCTTTTACTGGCGTCACTCCTCTTCCTCCACCATTATTCATCTCTAGCCCAGGACGAGTCCCCCGCTGCAGCTCCGG AGGCCGGGAAGCTGGGCCCCATCAACGTCGTCAAGATACTTAAGAAGGCCGGTAACTTCAAGGTCTTCGTCCGTCTCTTGAAAACAACTCAGCTTGACAG CAACCTCAATTCCCAGCTCGACGACACCAACAACGGCATCACCATCTTCGCCCCCACCGACGCTGCTTTCGCCAAGCTCAAACGTGGGACCCAGCTCGGA TCGTTGACCCGCCAGGAGAAGCTCCAGCTGGCACAGTTCCATATCATCCCTGTCTTCATCTCCCGCTCTGACTTCGAGTCCGTTAGCAGCCCCATGCCCA CCCACGCCGGCTCCGGCGACCTTCTGCAGCTCAATGTGACGGCGGCGTCAACCGGACCCAAGGCTGCTGTGAGTCTGACCACTGGGGTGACCAATACCAC GCTGTCCGATACCGTCTACATGGACGACAGTCACCTCGCGATTTACCAGGTTGACAACGTGCTTCTTCCTATGTCAATTGTCGGTGATCCTAAGGGGGCG GAGGCGGCAGGAGCTGTGGCGGCGTCGGAAGCAAGTAGTAGCGCGGAGGGAGATGCTGTTGACAACGACAATGGTGATGATGATGGTGGCGACGCTGGGG TGAGCAACACACGTGTTTCGGGGGCAATCCAAATCGGTTAA
AA sequence Show only first row Show all	>Lus10036115 pacid=23141037 polypeptide=Lus10036115 locus=Lus10036115.g ID=Lus10036115.BGIv1.0 annot-version=v1.0 MMKMQWQTLLLASLLFLHHYSSLAQDESPAAAPEAGKLGPINVVKILKKAGNFKVFVRLLKTTQLDSNLNSQLDDTNNGITIFAPTDAAFAKLKRGTQLG SLTRQEKLQLAQFHIIPVFISRSDFESVSSPMPTHAGSGDLLQLNVTAASTGPKAAVSLTTGVTNTTLSDTVYMDDSHLAIYQVDNVLLPMSIVGDPKGA EAAGAVAASEASSSAEGDAVDNDNGDDDGGDAGVSNTRVSGAIQIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036115 [exp]	0	1
AT4G09990			Protein of unknown function (D...		Lus10005822 [exp]	2.0	0.9791
AT3G27200			Cupredoxin superfamily protein...		Lus10022350 [exp]	4.9	0.9683
AT5G23400			Leucine-rich repeat (LRR) fami...		Lus10013454 [exp]	6.0	0.9650
AT3G49750		AtRLP44	receptor like protein 44 (.1)		Lus10011561 [exp]	6.3	0.9584
AT5G02640			unknown protein		Lus10025282 [exp]	6.3	0.9618
AT4G33330		PGSIP3, GUX2	glucuronic acid substitution o...		Lus10021731 [exp]	6.9	0.9603
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10018160 [exp]	8.1	0.9543
AT4G23610			Late embryogenesis abundant (L...		Lus10039662 [exp]	8.8	0.9509
AT5G38450		CYP735A1	"cytochrome P450, family 735, ...		Lus10017595 [exp]	8.9	0.9460
AT4G24910			Protein of unknown function (D...		Lus10003160 [exp]	10.9	0.9592

Compare expression of checked genes

Lus10036115 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.