Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69490 240 / 6e-78 NAC NAP, ANAC029, ATNAP Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) AT3G15510 242 / 2e-77 NAC ATNAC2, ANAC056, NARS1 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) AT1G61110 239 / 4e-77 NAC ANAC025 NAC domain containing protein 25 (.1) AT1G77450 236 / 1e-76 NAC ANAC032 NAC domain containing protein 32 (.1) AT3G04070 230 / 3e-73 NAC ANAC047 NAC domain containing protein 47 (.1.2) AT1G52890 224 / 3e-71 NAC ANAC019 NAC domain containing protein 19 (.1) AT1G52880 224 / 6e-71 NAC ATNAM, NAM, ANAC018, NARS2 NAC-REGULATED SEED MORPHOLOGY 2, Arabidopsis NAC domain containing protein 18, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G01720 222 / 2e-70 NAC ATAF1, ANAC002 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G15500 222 / 2e-70 NAC ATNAC3, ANAC055 NAC domain containing protein 55, NAC domain containing protein 3 (.1) AT5G08790 219 / 9e-70 NAC ATAF2, ANAC081 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007410 [exp] 612 / 0 AT3G15510 241 / 1e-78 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10015076 [exp] 280 / 4e-92 AT1G61110 247 / 5e-80 NAC domain containing protein 25 (.1) Lus10023179 [exp] 278 / 1e-91 AT1G61110 248 / 2e-80 NAC domain containing protein 25 (.1) Lus10019926 [exp] 278 / 1e-91 AT1G61110 243 / 4e-78 NAC domain containing protein 25 (.1) Lus10026496 [exp] 276 / 1e-90 AT1G61110 244 / 6e-79 NAC domain containing protein 25 (.1) Lus10030446 [exp] 255 / 8e-84 AT1G69490 302 / 2e-103 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Lus10026617 [exp] 249 / 3e-81 AT1G69490 298 / 1e-101 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Lus10011215 [exp] 249 / 2e-80 AT1G61110 305 / 1e-102 NAC domain containing protein 25 (.1) Lus10037156 [exp] 248 / 2e-80 AT1G69490 318 / 2e-109 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G129400 [exp] 283 / 5e-94 AT1G61110 247 / 3e-80 NAC domain containing protein 25 (.1) Potri.011G058600 [exp] 261 / 2e-85 AT3G15510 227 / 6e-72 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Potri.004G049500 [exp] 258 / 4e-84 AT1G61110 232 / 4e-74 NAC domain containing protein 25 (.1) Potri.011G046700 [exp] 256 / 4e-83 AT1G61110 331 / 8e-113 NAC domain containing protein 25 (.1) Potri.008G089000 [exp] 253 / 7e-83 AT1G69490 331 / 6e-115 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Potri.004G038000 [exp] 254 / 3e-82 AT1G61110 332 / 3e-113 NAC domain containing protein 25 (.1) Potri.001G404400 [exp] 251 / 5e-81 AT3G15510 345 / 1e-117 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Potri.011G123500 [exp] 249 / 3e-80 AT3G15510 323 / 4e-109 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Potri.019G031400 [exp] 236 / 4e-75 AT3G04070 332 / 1e-112 NAC domain containing protein 47 (.1.2) Potri.010G166200 [exp] 232 / 1e-74 AT1G69490 305 / 1e-104 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10036117 pacid=23141171 polypeptide=Lus10036117 locus=Lus10036117.g ID=Lus10036117.BGIv1.0 annot-version=v1.0 ATGGAGAGGTCTGGAGGAGAAGCCAACAACAATTGTAACAATAAGAGCTTTCAGTTCCCGCCTGGGTTCAGGTTCCATCCTTCCGACGAGGAGCTCATCG TGTTCTACTTGCAGAACAAGGTCACCTCCCGCCCACTTCCTGCTGCCATCATCGCTGAAGTTGATCTATACAAGTACAATCCATGGGAGCTTCCGGACAA GGCTCTGTTCGGGGAGGAAGAGTGGTACTTCTTCAGTCCAAGGGATCGCAAGTATCCAAATGGGGCGCGGCCAAACAGAGCAGCAGGGTCCGGATTCTGG AAGGCTACAGGGACTGATAAGCCGATATTGTCGACTTCAGGATCGAAGAGCATTGGGGTGAAGAAGGCTTTGGTTTTCTATTCAGGGAGACCACCAAAGG GAGTCAAGACTGACTGGATCATGAATGAGTACAGATTACTTGATCCAACCATTAAACCTTCCAGGATCAAAGGCTCCATGAGGTTGGACGATTGGGTACT ATGTCGTGTTCGACAGAAGGGACCCATGACATCGAAGAACCCATACGATGTGAACGGAAGCCCTGTGAAAGAAACAGTGAGTTACCTGCCAGTGAAAGAG GAGGCCGCAACTCCATACATGATGAACTGCGACAACGACATGATAAGAGACTGTTTGAACCAAGACTGCCGCGTCTTAGCTTCCCTCCTCGTCGGCCAGA CCTTACCAACCATCGATAACAATAATCGCAAAAGCAACAACGACAACAATGGCACCACTGTTAACAACAACTCTCCTCCTTCTATAACTGTTTCTCCATT CGAAAACTACGTCAACCCTCTCAAGAGAAAGTCTGGAGACGAAGACAACGACAGCTTCCTCCCGGAGAGCAAGAAGAGCAACAGCAGGGATGAACAGGAT CTCCTAGGTTGTGGTGGTGGTGGTGGTGAGAACAATTACAATGGCCAGAACCAATCTCAAGATGGATTCTATAACGAGGATGCAATGGACCCTATGATTG GATTGCTGGAACTCAATGAATTTGGCTTCTCTGGAAAATATCTGGAGTGA
AA sequence Show only first row Show all	>Lus10036117 pacid=23141171 polypeptide=Lus10036117 locus=Lus10036117.g ID=Lus10036117.BGIv1.0 annot-version=v1.0 MERSGGEANNNCNNKSFQFPPGFRFHPSDEELIVFYLQNKVTSRPLPAAIIAEVDLYKYNPWELPDKALFGEEEWYFFSPRDRKYPNGARPNRAAGSGFW KATGTDKPILSTSGSKSIGVKKALVFYSGRPPKGVKTDWIMNEYRLLDPTIKPSRIKGSMRLDDWVLCRVRQKGPMTSKNPYDVNGSPVKETVSYLPVKE EAATPYMMNCDNDMIRDCLNQDCRVLASLLVGQTLPTIDNNNRKSNNDNNGTTVNNNSPPSITVSPFENYVNPLKRKSGDEDNDSFLPESKKSNSRDEQD LLGCGGGGGENNYNGQNQSQDGFYNEDAMDPMIGLLELNEFGFSGKYLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Lus10036117 [exp]	0	1
AT1G26570		UGD1, ATUGD1	UDP-glucose dehydrogenase 1 (....		Lus10021639 [exp]	9.5	0.8498
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10042106 [exp]	11.7	0.8479
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Lus10004685 [exp]	21.6	0.7492
AT5G15430			Plant calmodulin-binding prote...		Lus10000141 [exp]	22.2	0.8476
AT2G27410	B3		Domain of unknown function (DU...		Lus10027284 [exp]	26.7	0.8379
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10029872 [exp]	30.6	0.8372
AT4G28110	MYB	ATMYB41	myb domain protein 41 (.1)		Lus10033738 [exp]	33.9	0.8334
AT3G47090			Leucine-rich repeat protein ki...		Lus10034078 [exp]	35.3	0.7918
AT5G15430			Plant calmodulin-binding prote...		Lus10003472 [exp]	36.6	0.8328
AT5G60330			unknown protein		Lus10018274 [exp]	37.6	0.8288

Compare expression of checked genes

Lus10036117 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.