Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45280 327 / 2e-113 ATSYP72, SYP72 syntaxin of plants 72 (.1) AT3G09740 312 / 3e-107 ATSYP71, SYP71 syntaxin of plants 71 (.1) AT3G61450 285 / 7e-97 ATSYP73, SYP73 syntaxin of plants 73 (.1.2) AT5G61210 43 / 0.0001 SNP33, ATSNAP33B, SNAP33 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) AT1G13890 42 / 0.0002 ATSNAP30, SNAP30 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019925 [exp] 328 / 2e-113 AT3G09740 419 / 2e-149 syntaxin of plants 71 (.1) Lus10023178 [exp] 320 / 3e-110 AT3G09740 416 / 1e-148 syntaxin of plants 71 (.1) Lus10026495 [exp] 320 / 7e-110 AT3G09740 408 / 5e-145 syntaxin of plants 71 (.1) Lus10015075 [exp] 311 / 4e-107 AT3G09740 417 / 3e-149 syntaxin of plants 71 (.1) Lus10036377 [exp] 298 / 9e-98 AT3G09740 347 / 8e-117 syntaxin of plants 71 (.1) Lus10014759 [exp] 267 / 1e-85 AT3G09740 308 / 4e-102 syntaxin of plants 71 (.1) Lus10007411 [exp] 75 / 1e-16 AT3G09740 65 / 1e-13 syntaxin of plants 71 (.1) Lus10026653 [exp] 50 / 4e-07 AT1G13890 220 / 1e-72 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) Lus10037092 [exp] 49 / 2e-06 AT1G13890 327 / 1e-113 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G129500 [exp] 334 / 7e-116 AT3G09740 377 / 3e-133 syntaxin of plants 71 (.1) Potri.016G088200 [exp] 333 / 1e-115 AT3G09740 384 / 3e-136 syntaxin of plants 71 (.1) Potri.014G087400 [exp] 318 / 8e-110 AT3G09740 352 / 2e-123 syntaxin of plants 71 (.1) Potri.015G049000 [exp] 44 / 7e-05 AT5G61210 403 / 3e-142 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) Potri.012G066700 [exp] 43 / 0.0001 AT5G61210 360 / 3e-125 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) Potri.010G160350 [exp] 40 / 0.001 AT1G13890 266 / 2e-89 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10036118 pacid=23141027 polypeptide=Lus10036118 locus=Lus10036118.g ID=Lus10036118.BGIv1.0 annot-version=v1.0 ATGAGCGTTATCGACATTATCTTCAGGGTTGATGAGATCTGCAAGAAATATGACAAGTACGACATCGAGAAGCAGCGGGAGCTCAATGCCTACGGGGACG ATGCCTTCGCTCGCCTTTACGCCACCGTCGAGGCTGAGATTGAAGCCGCTATGGGTAAAGCCGACAGGGCTTCAAAGGAGAGCAAAAGGGCTGTTACCGT TGCTTTGAATGCCGAAATTCGCAAGACCAAGACTCGGTTGATGGATGAAGTTACCAAACTTCAAAAGTTGGCTCTCAAGAAGGTTAAAGGACTTTCTAAG GAAGAACAGGCCATTCGTGCTGATCTGGTACTTGCACTACCAGAGAGGATTCAAGCCATACCCGATGGAACCACAGGAGCAGCAAACCAGTCTGGAGGAT GGGCTGGTTCTGCATCTCATAAGAATATCACATTCGATACGTCAGAAGAAAACCTTAACGATGGTTTTTTCCAACAATCTGAAGAATCTGACCAGTTTAG GCAGGAGTATGACAGGCGAAAACTTAAACAGGCATGCGAAGATGAAGGTCTTGATGTGATATCAGAGGGGTTGGATACGTTGAAAAATCTGGCCCATGAT ATGGGTGAGGAGTTGGACAGACAAGTTCCCTTAATGGATGAGATTGACACAAAGGTAGACAAAGCGAATTCCGAGTTGAGAAACACAAATGTCAAACTCA AGCAAACTCTAACTTCGATGAGATCCAGTCGCAACTTCTGCATTGACATTATCTTGATTTGTGTAATCCTGGGAATTGCTTCCTACATATACAAGTATGT TCCTTGCGGTCGATCATGCATGTCTCCTTTTATTCAGCTTTTGGATGGATGTTAG
AA sequence Show only first row Show all	>Lus10036118 pacid=23141027 polypeptide=Lus10036118 locus=Lus10036118.g ID=Lus10036118.BGIv1.0 annot-version=v1.0 MSVIDIIFRVDEICKKYDKYDIEKQRELNAYGDDAFARLYATVEAEIEAAMGKADRASKESKRAVTVALNAEIRKTKTRLMDEVTKLQKLALKKVKGLSK EEQAIRADLVLALPERIQAIPDGTTGAANQSGGWAGSASHKNITFDTSEENLNDGFFQQSEESDQFRQEYDRRKLKQACEDEGLDVISEGLDTLKNLAHD MGEELDRQVPLMDEIDTKVDKANSELRNTNVKLKQTLTSMRSSRNFCIDIILICVILGIASYIYKYVPCGRSCMSPFIQLLDGC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45280		ATSYP72, SYP72	syntaxin of plants 72 (.1)		Lus10036118 [exp]	0	1
					Lus10018415 [exp]	1.7	0.8100
AT4G17905		ATL4H	RING/U-box superfamily protein...		Lus10025338 [exp]	2.0	0.8180
AT1G17810		BETA-TIP	beta-tonoplast intrinsic prote...		Lus10040652 [exp]	7.4	0.8365
AT4G35700	C2H2ZnF	DAZ3	DUO1-activated zinc finger 3, ...		Lus10041659 [exp]	16.7	0.7956
AT5G39190		ATGER2, GLP2A	GERMIN-LIKE PROTEIN 2A, A. THA...		Lus10033764 [exp]	17.7	0.7399
AT5G52390			PAR1 protein (.1)		Lus10018204 [exp]	19.7	0.7706
					Lus10017959 [exp]	20.9	0.7517
AT1G07260		UGT71C3	UDP-glucosyl transferase 71C3 ...		Lus10010474 [exp]	22.4	0.6771
AT2G29040			Exostosin family protein (.1)		Lus10016532 [exp]	25.3	0.7502
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10037866 [exp]	25.8	0.7509

Compare expression of checked genes

Lus10036118 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.