Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45300 689 / 0 IVDH, ATIVD, IVD isovaleryl-CoA-dehydrogenase (.1) AT3G51840 150 / 9e-41 ATG6, ATSCX, ACX4 acyl-CoA oxidase 4 (.1) AT3G06810 96 / 6e-21 IBR3 IBA-RESPONSE 3, acyl-CoA dehydrogenase-related (.1) AT1G06290 45 / 0.0001 ATACX3, ACX3 acyl-CoA oxidase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027811 [exp] 150 / 1e-40 AT3G51840 741 / 0.0 acyl-CoA oxidase 4 (.1) Lus10020908 [exp] 99 / 5e-22 AT3G06810 1251 / 0.0 IBA-RESPONSE 3, acyl-CoA dehydrogenase-related (.1) Lus10033467 [exp] 94 / 3e-20 AT3G06810 1258 / 0.0 IBA-RESPONSE 3, acyl-CoA dehydrogenase-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G011700 [exp] 727 / 0 AT3G45300 694 / 0.0 isovaleryl-CoA-dehydrogenase (.1) Potri.016G118000 [exp] 149 / 2e-40 AT3G51840 750 / 0.0 acyl-CoA oxidase 4 (.1) Potri.006G101800 [exp] 145 / 5e-39 AT3G51840 751 / 0.0 acyl-CoA oxidase 4 (.1) Potri.010G010448 [exp] 93 / 5e-20 AT3G06810 1251 / 0.0 IBA-RESPONSE 3, acyl-CoA dehydrogenase-related (.1) Potri.008G219000 [exp] 92 / 7e-20 AT3G06810 1236 / 0.0 IBA-RESPONSE 3, acyl-CoA dehydrogenase-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02770 [flax] [poplar] Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain CL0087 [flax] [poplar] Acyl-CoA_dh PF00441 [flax] [poplar] Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain CL0544 [flax] [poplar] AcylCoA_ox_dh_N PF02771 [flax] [poplar] Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10036122 pacid=23141176 polypeptide=Lus10036122 locus=Lus10036122.g ID=Lus10036122.BGIv1.0 annot-version=v1.0 ATGATGATGATGCGGAGGTTGTTTACTGCGAGGAGGTCTCTATCTCCCCCTTCTCATCCTCTTATTCTTTTCAACGCCAGTAAGCTTGCCGCTCCCTTCT CAACGTCTCTGCTCTTCGACGACACTCAGCTCCAGTTTAAAGAAAGTGTTTATCAGTTTGCACAGGAAAACATTGCTCCTCATGCATCTCAAATAGATCA CAATAACTATTTCCCTAAGGATGTCAACTTGTGGAAATTGATGGGAGATTTTAATCTCCTCGGAATTACTGCACCAGAGGAATATGGAGGGCTTGGTCTT GGTTACTTGTACCACTGCATAGCAATGGAAGAAATTAGCCGAGCTTCAGGATCTGTTGGCCTTTCGTATGGTGCCCACTCCAACTTGTGCCTTAACCAGT TGGTAAGGAATGGAAATCCTGCTCAGAAAGAGAAGTACTTGCCAAAGCTTATCAGTGGGGAGCACGTAGGAGCTCTTGCAATGAGTGAACCCAATGCTGG TTCTGATGTTGTTAGCATGAAATGTAAAGCTGAACGTGTTGATGGTGGTTATGTGCTGAACGGAAATAAAATGTGGTGCACAAATGGCCCAACTGCTCAA ACATTGGTTGTATATGCAAAGACGGATGTAACATCTGGCTCAAAAGGAATCACAGCGTTCATCATTGAGAAGGGAATGCCCGGATTCAGTACAGCCCAGA AATTGGATAAACTTGGTATGCGTGGAAGTGACACGTGTGAGCTTGTATTTGAGAATTGTTTCGTCCCTGAAGAGAATGTGCTTGGGCAAGAAGGAAAAGG GGTTTATGTAATGATGTCTGGGCTGGATTTGGAAAGACTTGTATTGGCTGGTGGCCCTCTTGGTATCATGCAAACATGCCTTGACGTCGTTCTTCCTTAT GTTCGACAAAGAGAGCAATTTGGCAGTCCAATCGGGGAGTTTCAGTTTATACAGGGTAAAGTTGCTGACATGTATACTTCACTACAATCTTCAAGGGCGT ATGTATACTCAGTCGCAAGGGACTGTGACAATGGGAAAGTTGACCCCAAGGATTGTGCAGGAGTCATACTAACCTCTGCAGAAAGGGCTACCCAGGTTGC TCTGCAGGCTATACAGTGTTTGGGTGGAAATGGCTACATAAATGAATACCCAACTGGGCGTCTTCTTCGAGATGCTAAGTTGTATGAGATTGGTGCTGGA ACTAGTGAGATACGAAGACTGATTATCGGCCGACAACTCTTCAAGCAGTGA
AA sequence Show only first row Show all	>Lus10036122 pacid=23141176 polypeptide=Lus10036122 locus=Lus10036122.g ID=Lus10036122.BGIv1.0 annot-version=v1.0 MMMMRRLFTARRSLSPPSHPLILFNASKLAAPFSTSLLFDDTQLQFKESVYQFAQENIAPHASQIDHNNYFPKDVNLWKLMGDFNLLGITAPEEYGGLGL GYLYHCIAMEEISRASGSVGLSYGAHSNLCLNQLVRNGNPAQKEKYLPKLISGEHVGALAMSEPNAGSDVVSMKCKAERVDGGYVLNGNKMWCTNGPTAQ TLVVYAKTDVTSGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQEGKGVYVMMSGLDLERLVLAGGPLGIMQTCLDVVLPY VRQREQFGSPIGEFQFIQGKVADMYTSLQSSRAYVYSVARDCDNGKVDPKDCAGVILTSAERATQVALQAIQCLGGNGYINEYPTGRLLRDAKLYEIGAG TSEIRRLIIGRQLFKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45300		IVDH, ATIVD, IV...	isovaleryl-CoA-dehydrogenase (...		Lus10036122 [exp]	0	1
AT1G03090		MCCA	methylcrotonyl-CoA carboxylase...		Lus10042623 [exp]	1.0	0.9709
AT4G32190			Myosin heavy chain-related pro...		Lus10006190 [exp]	1.4	0.9687
AT1G60140		ATTPS10	TREHALOSE PHOSPHATE SYNTHASE 1...		Lus10030853 [exp]	1.7	0.9658
AT3G04590	AT-hook		AT hook motif DNA-binding fami...		Lus10005518 [exp]	2.6	0.9444
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10025092 [exp]	3.3	0.9362
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Lus10023493 [exp]	3.5	0.9577
AT4G32190			Myosin heavy chain-related pro...		Lus10041037 [exp]	4.0	0.9404
AT1G28260			Telomerase activating protein ...		Lus10014007 [exp]	4.2	0.9393
AT4G24800		ECIP1	EIN2 C-terminus Interacting Pr...		Lus10018085 [exp]	4.5	0.9544
AT5G60230		ATSEN2, SEN2	splicing endonuclease 2 (.1.2)		Lus10019074 [exp]	4.9	0.9487

Compare expression of checked genes

Lus10036122 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.