Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56450 426 / 4e-153 PBG1 20S proteasome beta subunit G1 (.1) AT5G40580 43 / 7e-05 PBB2 20S proteasome beta subunit PBB2 (.1.2.3) AT3G27430 43 / 8e-05 PBB1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) AT4G14800 41 / 0.0003 PBD2 20S proteasome beta subunit D2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011640 [exp] 504 / 0 AT1G56450 427 / 8e-154 20S proteasome beta subunit G1 (.1) Lus10032102 [exp] 46 / 1e-05 AT3G27430 473 / 6e-171 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Lus10014581 [exp] 45 / 3e-05 AT5G40580 471 / 2e-169 20S proteasome beta subunit PBB2 (.1.2.3) Lus10021909 [exp] 40 / 0.001 AT3G22630 360 / 2e-128 20S proteasome beta subunit D1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G037700 [exp] 431 / 3e-155 AT1G56450 407 / 5e-146 20S proteasome beta subunit G1 (.1) Potri.006G242000 [exp] 425 / 8e-153 AT1G56450 399 / 1e-142 20S proteasome beta subunit G1 (.1) Potri.006G077900 [exp] 50 / 2e-07 AT4G31300 416 / 2e-149 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Potri.017G071100 [exp] 46 / 9e-06 AT5G40580 497 / 1e-180 20S proteasome beta subunit PBB2 (.1.2.3) Potri.010G084800 [exp] 45 / 1e-05 AT3G22630 366 / 6e-131 20S proteasome beta subunit D1 (.1) Potri.008G155500 [exp] 44 / 3e-05 AT3G22630 364 / 6e-130 20S proteasome beta subunit D1 (.1) Potri.004G066000 [exp] 44 / 3e-05 AT3G27430 495 / 1e-179 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [flax] [poplar] NTN PF00227 [flax] [poplar] Proteasome Proteasome subunit
Representative CDS sequence Show only first row Show all	>Lus10036124 pacid=23141230 polypeptide=Lus10036124 locus=Lus10036124.g ID=Lus10036124.BGIv1.0 annot-version=v1.0 ATGGAGTCGAATCAAACTAAGCCGAGCCTTCTGGCTTCTGAATCTGACTCCCAACGAACGCTATATCCGTATGTGACTGGTACGTCCGTCGTGGCTTTGA AGTACAAGGACGGGATTTTGATGGCTGCTGACATGGGAGGTTCATATGGGTCGACCTTGCGTTACAAGAGTGTGGGGCGAATGACGCCTGTTGGGAAGCA CTCTCTGCTTGGGGCAAGTGGGGAAATCAGTGATTTCCAGGAGATATGCCGATATCTTGATCAGCTGGTCCTAAATGACAACATGTGGGATGATGGGAAC TCTTTGGGTCCAAAAGAAGTGCACAACTATTTGACTAGAGTTATGTACAATAGGAGGAACAAGTTTGATCCTTTTTGGAATGCGCTTGTTCTTGGTGGAG TTAAAAATGGTCAGAAGTATCTCGGCATGGTAAACATGATTGGCCTTAATTTTGAGGATGATCATGTTGCGACTGGATTTGGAAATCACCTTGCTCGACC AATCCTTCGTGACGAGTGGCATGAAAACCTGAGCTTTGAAGATGGTGTTAAGTTGCTGGAGAAATGTATGCGTGTGCTCTTGTACCGTGACAGATCTGCT GTCAATAAGCTTCAGATAGCTAAGATAACGGAAGAAGGTGTGACAATTTCACAGCCCTACTCATTGAAGACTTTCTGGGGATACGCAGCATTCCAGAATC CAACTGCAGGTGCGGAGGGATCATGGTAG
AA sequence Show only first row Show all	>Lus10036124 pacid=23141230 polypeptide=Lus10036124 locus=Lus10036124.g ID=Lus10036124.BGIv1.0 annot-version=v1.0 MESNQTKPSLLASESDSQRTLYPYVTGTSVVALKYKDGILMAADMGGSYGSTLRYKSVGRMTPVGKHSLLGASGEISDFQEICRYLDQLVLNDNMWDDGN SLGPKEVHNYLTRVMYNRRNKFDPFWNALVLGGVKNGQKYLGMVNMIGLNFEDDHVATGFGNHLARPILRDEWHENLSFEDGVKLLEKCMRVLLYRDRSA VNKLQIAKITEEGVTISQPYSLKTFWGYAAFQNPTAGAEGSW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56450		PBG1	20S proteasome beta subunit G1...		Lus10036124 [exp]	0	1
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10031085 [exp]	1.4	0.9210
AT3G22110		PAC1	20S proteasome alpha subunit C...		Lus10004235 [exp]	1.4	0.9399
AT4G24820			26S proteasome, regulatory sub...		Lus10014916 [exp]	4.2	0.9169
AT4G26210			Mitochondrial ATP synthase sub...		Lus10001771 [exp]	11.0	0.9148
AT1G21720		PBC1	proteasome beta subunit C1 (.1...		Lus10020599 [exp]	12.7	0.8254
AT5G17250			Alkaline-phosphatase-like fami...		Lus10006806 [exp]	13.2	0.8807
AT5G35620		eIFiso4E, EIF(I...	LOSS OF SUSCEPTIBILITY TO POTY...		Lus10023733 [exp]	14.7	0.9026
AT1G56450		PBG1	20S proteasome beta subunit G1...		Lus10011640 [exp]	14.9	0.8142
AT5G57290			60S acidic ribosomal protein f...		Lus10012714 [exp]	15.3	0.9101
AT1G26880			Ribosomal protein L34e superfa...		Lus10037177 [exp]	15.5	0.9124

Compare expression of checked genes

Lus10036124 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.