Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07960 176 / 2e-57 ATPDIL5-1 PDI-like 5-1 (.1.2.3) AT1G04980 67 / 1e-13 ATPDI10, ATPDIL2-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) AT2G47470 62 / 5e-12 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT2G32920 61 / 2e-11 ATPDI9, ATPDIL2-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, PDI-like 2-3 (.1) AT1G21750 54 / 6e-09 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) AT1G77510 47 / 8e-07 ATPDI6, ATPDIL1-2 PROTEIN DISULFIDE ISOMERASE 6, PDI-like 1-2 (.1) AT5G60640 40 / 0.0003 ATPDI2, ATPDIL1-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) AT4G27080 40 / 0.0003 ATPDI7, ATPDIL5-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) AT3G54960 39 / 0.0009 ATPDI1, ATPDIL1-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011641 [exp] 214 / 1e-69 AT1G07960 210 / 6e-68 PDI-like 5-1 (.1.2.3) Lus10036337 [exp] 65 / 7e-13 AT2G47470 548 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10010274 [exp] 65 / 8e-13 AT2G47470 549 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10015160 [exp] 60 / 4e-11 AT1G04980 621 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10020691 [exp] 60 / 5e-11 AT2G47470 473 / 3e-168 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10035360 [exp] 58 / 2e-10 AT1G04980 543 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10031522 [exp] 56 / 9e-10 AT1G04980 651 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10029681 [exp] 51 / 4e-08 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10042721 [exp] 50 / 8e-08 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G004500 [exp] 182 / 5e-60 AT1G07960 182 / 3e-60 PDI-like 5-1 (.1.2.3) Potri.002G198300 [exp] 66 / 3e-13 AT2G47470 530 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.014G160000 [exp] 65 / 6e-13 AT1G04980 617 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Potri.014G122800 [exp] 64 / 2e-12 AT2G47470 551 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.002G082100 [exp] 50 / 1e-07 AT1G21750 689 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.005G179000 [exp] 48 / 4e-07 AT1G21750 680 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.002G066800 [exp] 38 / 0.0007 AT1G76760 192 / 2e-63 thioredoxin Y1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10036125 pacid=23141168 polypeptide=Lus10036125 locus=Lus10036125.g ID=Lus10036125.BGIv1.0 annot-version=v1.0 ATGGGAAGCTTGAATCGCGTTGTTTCCCTCTCCTACCTTATCCTCCTCTTGTTCCTCATTTCGCCTACTAAACCTGAAGTTATAACCCTAACCCCGGAGA CATTCTCCGACAAGGTGAAGGAGAAAGACACATCATGGTTTGTGAAGTTTTGTGTTCCTTGGTGCAAGCACTGTAAGAATCTTGGCTCGTTATGGGAGGA GCTAGGGAAGGCAATGGAAGGAGAAGATGGGATAGAGGTTGGAGAAGTGGATTGCGGAGCAAGCAAACCTGTGTGCTCAAAAGTCGACATTCACTCATAC CCAACATTCAAGGTCTTTTATGATGGAGAAGAAGTTGCTAAATACCAAGGAAAGAGGGATGTAGAATCACTGAAAGCATTCGTCTTGGACGAAGCTGAAA AGGCGGCAACCAAAGCTGAAGTCGACAAGGACAAGGATTTATGA
AA sequence Show only first row Show all	>Lus10036125 pacid=23141168 polypeptide=Lus10036125 locus=Lus10036125.g ID=Lus10036125.BGIv1.0 annot-version=v1.0 MGSLNRVVSLSYLILLLFLISPTKPEVITLTPETFSDKVKEKDTSWFVKFCVPWCKHCKNLGSLWEELGKAMEGEDGIEVGEVDCGASKPVCSKVDIHSY PTFKVFYDGEEVAKYQGKRDVESLKAFVLDEAEKAATKAEVDKDKDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07960		ATPDIL5-1	PDI-like 5-1 (.1.2.3)		Lus10036125 [exp]	0	1
AT3G45020			Ribosomal L18p/L5e family prot...		Lus10021433 [exp]	2.2	0.8911
AT5G61310			Cytochrome c oxidase subunit V...		Lus10002429 [exp]	2.4	0.8770
AT3G06610			DNA-binding enhancer protein-r...		Lus10037773 [exp]	2.8	0.8875
AT5G65270		AtRABA4a	RAB GTPase homolog A4A (.1)		Lus10035924 [exp]	3.5	0.8615
AT4G00530			unknown protein		Lus10037854 [exp]	6.0	0.8580
AT4G26965			NADH:ubiquinone oxidoreductase...		Lus10032642 [exp]	6.3	0.8528
AT1G69980			unknown protein		Lus10010734 [exp]	6.3	0.8600
AT5G61310			Cytochrome c oxidase subunit V...		Lus10025028 [exp]	8.7	0.8308
AT2G43760			molybdopterin biosynthesis Moa...		Lus10026805 [exp]	8.8	0.8608
AT5G09830			BolA-like family protein (.1)		Lus10020861 [exp]	8.9	0.8688

Compare expression of checked genes

Lus10036125 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.