Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47950 185 / 2e-53 HXXXD-type acyl-transferase family protein (.1) AT3G26040 184 / 5e-53 HXXXD-type acyl-transferase family protein (.1) AT4G15390 175 / 2e-49 HXXXD-type acyl-transferase family protein (.1) AT3G30280 173 / 8e-49 HXXXD-type acyl-transferase family protein (.1) AT1G24420 162 / 9e-45 HXXXD-type acyl-transferase family protein (.1) AT1G24430 137 / 2e-35 HXXXD-type acyl-transferase family protein (.1) AT5G47980 132 / 1e-33 HXXXD-type acyl-transferase family protein (.1) AT4G15400 126 / 8e-32 HXXXD-type acyl-transferase family protein (.1) AT5G23970 114 / 1e-27 HXXXD-type acyl-transferase family protein (.1) AT5G41040 103 / 1e-23 HXXXD-type acyl-transferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036077 [exp] 744 / 0 AT1G24420 188 / 2e-54 HXXXD-type acyl-transferase family protein (.1) Lus10034600 [exp] 571 / 0 AT3G30280 145 / 6e-39 HXXXD-type acyl-transferase family protein (.1) Lus10001107 [exp] 400 / 6e-136 AT3G26040 193 / 2e-56 HXXXD-type acyl-transferase family protein (.1) Lus10000319 [exp] 328 / 1e-107 AT3G26040 198 / 2e-58 HXXXD-type acyl-transferase family protein (.1) Lus10004441 [exp] 326 / 3e-107 AT3G26040 196 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10012759 [exp] 288 / 2e-92 AT3G26040 209 / 3e-62 HXXXD-type acyl-transferase family protein (.1) Lus10042994 [exp] 269 / 3e-85 AT3G26040 184 / 3e-53 HXXXD-type acyl-transferase family protein (.1) Lus10002893 [exp] 267 / 2e-84 AT5G47950 195 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10016353 [exp] 260 / 9e-82 AT3G26040 201 / 1e-59 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G124156 [exp] 266 / 7e-84 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 261 / 3e-82 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 261 / 5e-82 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 261 / 5e-82 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124500 [exp] 258 / 9e-81 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124268 [exp] 258 / 9e-81 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.008G033500 [exp] 243 / 1e-74 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.008G034300 [exp] 236 / 2e-72 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G034100 [exp] 227 / 5e-69 AT3G26040 270 / 4e-86 HXXXD-type acyl-transferase family protein (.1) Potri.008G034200 [exp] 211 / 4e-63 AT3G26040 254 / 9e-80 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10036126 pacid=23141120 polypeptide=Lus10036126 locus=Lus10036126.g ID=Lus10036126.BGIv1.0 annot-version=v1.0 ATGGAAGCGGAAGGACGTGATAAAATGAGAGTGGAAGTGATATCAGTGGAGAAGATAAAGCCAACGTTAATTATAAGAGAAGAGAAACTTGATGATGATG CTTTCAGCCTCGGCTTTATTGACCAGATGATGATGCGAAGTTATTTTGGGATCGTCATCTTCTATCCTCCGCCACCTTCTGCAACTAACAACAACGACGA CGACGGCAATGAAGGAGAAAAGAAATATAACGTTGGGAAGCAGCTCAAAGCCACACTCTCCAGCGCACTTGATACTTTCTACCCATTATCCGGAAGGGTT AAGGGAAATCTCACCGTTGATGACTTCCAAGCTGGGGTCCCCTTCACCGAAACTCGAGTTAAGGGGTACGATAGTCTTCCCGACTTCCTAAAATCTCCGA ATTTGGAATTCCTCAACCATTTGTCTCCCGTAGAGACCTTCGCTCTCACTACAACCTACGACGAGCCACAACCGCCGCCACTTCTAGTCCAAGTCAACAC CTTTCCTTGCGGCGGCATTGCTCTTGGCCTCTGTTTCAATCACAAGCTCGTCGACGGCGCCACTGCCGATGCATTCCTCAACACATGGGCTTCACAACAT TCTCATCACCATCATGATCCAATCTCCACCAAAGCCTCCTCTGTTTTCGCTCCCAGACAATCCATTCCTCCGGAACTCGCGTACGTTGTTGACGAATCTT ACCACCTGAATCGTAAAACCAGCACCAGGAGGTTCGTGTTCGATTCTAACTCTGTAGCCGCGTTGAAATCCATCGGTTCGAGTAGCGAAATTCAAAACCC GAGCAGAACCGAAGCAGTATTAGCATTCATTTGGAAATCTATCATGGCCGCCTCAGCTCCAACCCCAACTCTGTCCCCGCAGCTTCTCATCCTAGGAGTT AATCTACGATCCCGAATGAAGCGCTTATCATCATCTGACAACAAGCACTTCTCGTTCGGAAATCTTGTCCTTATGGCAGGGGCATTAATGTCGTCCACTG ATGATGATCTAGTTCAACTTATACGGAAAGGTGTGGCTAGTGTGGATGAAAACTTCATGAACTTCATCTCCTCGTCTACAGAGGAAGCGTTCCAAGCCAT GGTGGAGGGGCTAAAGCAGTTTAGAGATTTGGATTCGAAACTTCTAACGACGTCAAGCTGGATAAGGTTTTGCTTCAGTGATGCCGACTTTGGGTTTGGG AAGCCAGTGTGGACTGGTGTGCTTGGAGAAGCCAGCGGGAATTATCCAACTTACGGTAACATGGTCATTCTCACTGAATTATTAGCTGATCCAAACGAAA AGAAGAATAATAATGATGATAATTCTACTGGTGGTCGTGGAATAGAGGCGTGGATCAGGCTTGATGTTGAGCTGATGAACCTTCTTGAGCAGAATTCCAA CTTCCTTCAATTTGCTTCCATCAATCCCCCTGTACTCTTCTAG
AA sequence Show only first row Show all	>Lus10036126 pacid=23141120 polypeptide=Lus10036126 locus=Lus10036126.g ID=Lus10036126.BGIv1.0 annot-version=v1.0 MEAEGRDKMRVEVISVEKIKPTLIIREEKLDDDAFSLGFIDQMMMRSYFGIVIFYPPPPSATNNNDDDGNEGEKKYNVGKQLKATLSSALDTFYPLSGRV KGNLTVDDFQAGVPFTETRVKGYDSLPDFLKSPNLEFLNHLSPVETFALTTTYDEPQPPPLLVQVNTFPCGGIALGLCFNHKLVDGATADAFLNTWASQH SHHHHDPISTKASSVFAPRQSIPPELAYVVDESYHLNRKTSTRRFVFDSNSVAALKSIGSSSEIQNPSRTEAVLAFIWKSIMAASAPTPTLSPQLLILGV NLRSRMKRLSSSDNKHFSFGNLVLMAGALMSSTDDDLVQLIRKGVASVDENFMNFISSSTEEAFQAMVEGLKQFRDLDSKLLTTSSWIRFCFSDADFGFG KPVWTGVLGEASGNYPTYGNMVILTELLADPNEKKNNNDDNSTGGRGIEAWIRLDVELMNLLEQNSNFLQFASINPPVLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036126 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10026237 [exp]	2.4	0.8938
					Lus10024160 [exp]	2.6	0.8104
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036078 [exp]	2.8	0.8930
AT5G25120		CYP71B11	"ytochrome p450, family 71, su...		Lus10013194 [exp]	3.5	0.8723
					Lus10008440 [exp]	3.5	0.8549
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10001110 [exp]	5.9	0.8493
AT5G62420			NAD(P)-linked oxidoreductase s...		Lus10031739 [exp]	7.7	0.8253
AT3G56380		ARR17	response regulator 17 (.1)		Lus10029027 [exp]	11.5	0.7268
AT1G24420			HXXXD-type acyl-transferase fa...		Lus10036077 [exp]	12.2	0.7516
					Lus10005608 [exp]	12.7	0.7982

Compare expression of checked genes

Lus10036126 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.