Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60250 338 / 1e-107 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G37560 272 / 7e-85 RING/U-box superfamily protein (.1) AT2G25370 271 / 7e-83 RING/U-box superfamily protein (.1.2) AT3G45580 251 / 3e-77 RING/U-box protein with C6HC-type zinc finger (.1) AT2G21420 251 / 2e-76 IBR domain containing protein (.1) AT2G19610 235 / 3e-71 RING/U-box superfamily protein (.1.2) AT2G25360 234 / 3e-71 RING/U-box superfamily protein (.1) AT2G26130 224 / 3e-67 RING/U-box protein with C6HC-type zinc finger (.1) AT3G45540 221 / 1e-66 RING/U-box protein with C6HC-type zinc finger (.1) AT2G26135 219 / 1e-65 RING/U-box protein with C6HC-type zinc finger (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036128 [exp] 432 / 8e-146 AT5G60250 410 / 1e-136 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10038341 [exp] 153 / 7e-40 AT4G19670 607 / 0.0 RING/U-box superfamily protein (.1.2) Lus10036202 [exp] 146 / 2e-37 AT4G19670 624 / 0.0 RING/U-box superfamily protein (.1.2) Lus10024093 [exp] 125 / 6e-32 AT3G14250 209 / 2e-66 RING/U-box superfamily protein (.1) Lus10000412 [exp] 116 / 3e-28 AT3G14250 228 / 9e-73 RING/U-box superfamily protein (.1) Lus10026104 [exp] 112 / 1e-26 AT3G14250 240 / 1e-77 RING/U-box superfamily protein (.1) Lus10022063 [exp] 105 / 3e-25 AT3G53690 175 / 3e-53 RING/U-box superfamily protein (.1) Lus10013371 [exp] 72 / 7e-13 AT2G31510 441 / 2e-150 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10042610 [exp] 62 / 3e-10 AT3G53690 113 / 9e-17 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G150100 [exp] 613 / 0 AT5G60250 378 / 6e-124 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.006G104700 [exp] 466 / 3e-158 AT5G60250 424 / 4e-141 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.012G119000 [exp] 152 / 9e-40 AT4G19670 622 / 0.0 RING/U-box superfamily protein (.1.2) Potri.015G117600 [exp] 149 / 1e-38 AT4G19670 661 / 0.0 RING/U-box superfamily protein (.1.2) Potri.003G187700 [exp] 132 / 4e-34 AT3G14250 242 / 8e-79 RING/U-box superfamily protein (.1) Potri.001G037200 [exp] 122 / 1e-30 AT3G14250 240 / 3e-78 RING/U-box superfamily protein (.1) Potri.018G064400 [exp] 116 / 5e-28 AT3G53690 273 / 1e-89 RING/U-box superfamily protein (.1) Potri.013G120300 [exp] 95 / 1e-21 AT3G53690 158 / 7e-47 RING/U-box superfamily protein (.1) Potri.019G093600 [exp] 94 / 2e-21 AT3G53690 158 / 7e-47 RING/U-box superfamily protein (.1) Potri.006G123500 [exp] 92 / 1e-20 AT3G53690 163 / 1e-48 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF01485 [flax] [poplar] IBR IBR domain, a half RING-finger domain
Representative CDS sequence Show only first row Show all	>Lus10036127 pacid=23140996 polypeptide=Lus10036127 locus=Lus10036127.g ID=Lus10036127.BGIv1.0 annot-version=v1.0 ATGGATTCCAACGATAGGATTGCCATGGAGGCAATGCTCTCCGAGCAACGCCGCGAAATATTAAACGCCAAAACCGTGAACGCTGACCTTGATTATGCCT TCGACCTCCAACTGCAGGAAGCCATCAACGTTTCCATGAATCACCTTCCATCCTCTTCTCTCTCCTCGCCGCCAATGCCGCTAGGCGACGCAGGCGGCGA CGGCGACGTAGAGGTCGAGATCGACTACATGACTATTCTCCTCGAGGACATTAAACAGGTCGAGCAAGAGATGGAGGACCGGAGACAGAGCGAGGTTTTG CTGCGTGAGATGAAACAGGATCTCGACCGTCGTATTTTCGATCACCAGTTTGCCGGCGAGATCCTCAACATCCCTGACTTACAGTGGGAGAAGTACGGCG ATAACTATGAGAACCCTTATGTAAGTGACGGGGCAGGCGGTCAGTGCTCTACTTCCTCCTCGTCGGTTGCTGCTCAGCTTGCGTGGGTGAGCTCGGAGAC TTTCCGGCTGTATTTCAAGGGTTTGGAGAGCGAAGAGCGGGTTAGGGATAAGACAGTGGCGGTGGCTGGTTTCGGAGTAGCTATTTGCGATTCGAGAGAT AATCTGATTTTCGAGCTCAGTAAAGGATTTGATGAAGCTATTGTCCTTAGGTGGGGAACAGGAAAAATTGCTCAAGGCTTGGTTATGGCGATTCACGCTC TGATTGAAGGCTTAAATGCTGCTCTGACATTTGATTTGAAGAAGATCACCTACATGTGCGATGATTTCATGACATACCAATACTCTCAACCTCATTGGGG GCTCAAATTTCTTTGCATGTTCTATATCTTCTCTAGACTCAAGACTAGCACAACACAGCAAAAGGCTGCTAGTCTTTCTAGGTTCACTGAGTATTTAGCT GGTTTGTGGATCTCTCTCATCTGGGGTCGAGTTCAACCAACTCAGCGTGAGGTTCTGGACCTCCTTAATCAGGTATCTTCTCTTCAAAAGAAGTTCACAG AGTGCAGGCCGTCCCTTGTGGCACGCAATGATATCAAATTTGCGTTCAAGCTTGCAAGAGATGCAATAGTTTCTCAGATAACTTGGTGTGTGGAAGATGG CAAAGGCAGTAGTTTGAAGGAGACTTGTGTGATTTGCTATGAAGATACTGATACTGCACAGATGTTCCCTATTGATAATTGCCTGCACAGATATTGCTTT TCTTGTATGAAGCAGCATGTTGAGGTGGCCTTACTGAATGGCAAGGATGCTAAGTGTCCTCATGTCGGCTGTGAGTCTGAAATAAAAATCCTTTCTTGTG CGAAGTTCCTGGACCCTAAATTAGTCGACATCATGAGTCAAAGAAAGAAGGAAGCTTCTATCCCAGTGAGTGATAAGATTTACTGCCCTTATCCAAAATG CTCCAATTTGATGACAAAGAGAGAGGTGTTAGCATACACAAAGCACTACTTTGTTGGTGCGGAAGCATCTGGAGCCAGGAGATGCATGAAATGCAGCAAC TATTTCTGTATCAACTGCAGGGTTGCTTGGCACTATGACATGAGTTGCCATGATTATAAACAATCAAACCGCCATGTCCGGGAGGATAGGATGCTAAACT CGCTAGCCAATCAGAGTAAGTGGCGCCAATGTGTCAAGTGTAGTCATATGATCGAGCTTGATTATGGCTGCTACCATATAACTTGCAGGTGCGGGTACGA GTTCTGTTACACTTGTGGTGCTCCATGGAAGAACAAGAAAGCAACTTGTTCGTGTGCAATCTGGGATGAGCGCAACCTCATACGCGACAGGGGACCTCAT TGA
AA sequence Show only first row Show all	>Lus10036127 pacid=23140996 polypeptide=Lus10036127 locus=Lus10036127.g ID=Lus10036127.BGIv1.0 annot-version=v1.0 MDSNDRIAMEAMLSEQRREILNAKTVNADLDYAFDLQLQEAINVSMNHLPSSSLSSPPMPLGDAGGDGDVEVEIDYMTILLEDIKQVEQEMEDRRQSEVL LREMKQDLDRRIFDHQFAGEILNIPDLQWEKYGDNYENPYVSDGAGGQCSTSSSSVAAQLAWVSSETFRLYFKGLESEERVRDKTVAVAGFGVAICDSRD NLIFELSKGFDEAIVLRWGTGKIAQGLVMAIHALIEGLNAALTFDLKKITYMCDDFMTYQYSQPHWGLKFLCMFYIFSRLKTSTTQQKAASLSRFTEYLA GLWISLIWGRVQPTQREVLDLLNQVSSLQKKFTECRPSLVARNDIKFAFKLARDAIVSQITWCVEDGKGSSLKETCVICYEDTDTAQMFPIDNCLHRYCF SCMKQHVEVALLNGKDAKCPHVGCESEIKILSCAKFLDPKLVDIMSQRKKEASIPVSDKIYCPYPKCSNLMTKREVLAYTKHYFVGAEASGARRCMKCSN YFCINCRVAWHYDMSCHDYKQSNRHVREDRMLNSLANQSKWRQCVKCSHMIELDYGCYHITCRCGYEFCYTCGAPWKNKKATCSCAIWDERNLIRDRGPH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60250			zinc finger (C3HC4-type RING f...		Lus10036127 [exp]	0	1
AT3G11710		ATKRS-1	lysyl-tRNA synthetase 1 (.1)		Lus10001625 [exp]	2.4	0.8676
AT1G69440		ZIP, AGO7	ZIPPY, ARGONAUTE7, Argonaute f...		Lus10037136 [exp]	3.5	0.8618
AT2G36350			Protein kinase superfamily pro...		Lus10035591 [exp]	3.9	0.8882
AT3G20280			RING/FYVE/PHD zinc finger supe...		Lus10013301 [exp]	6.3	0.8516
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Lus10010577 [exp]	7.9	0.8701
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10009401 [exp]	10.2	0.8398
AT3G24060			Plant self-incompatibility pro...		Lus10011754 [exp]	15.0	0.7976
AT2G01210			Leucine-rich repeat protein ki...		Lus10043480 [exp]	16.0	0.8379
AT3G14470			NB-ARC domain-containing disea...		Lus10022351 [exp]	18.4	0.8219
					Lus10008149 [exp]	19.0	0.8004

Compare expression of checked genes

Lus10036127 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.