Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60250 399 / 5e-132 zinc finger (C3HC4-type RING finger) family protein (.1) AT3G45580 303 / 4e-98 RING/U-box protein with C6HC-type zinc finger (.1) AT2G25370 299 / 4e-94 RING/U-box superfamily protein (.1.2) AT5G37560 288 / 1e-91 RING/U-box superfamily protein (.1) AT2G21420 287 / 4e-91 IBR domain containing protein (.1) AT2G25360 264 / 2e-83 RING/U-box superfamily protein (.1) AT3G43750 261 / 2e-82 RING/U-box protein with C6HC-type zinc finger domain (.1) AT2G26135 258 / 8e-81 RING/U-box protein with C6HC-type zinc finger (.1) AT2G26130 253 / 9e-79 RING/U-box protein with C6HC-type zinc finger (.1) AT3G45480 239 / 9e-74 RING/U-box protein with C6HC-type zinc finger (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036127 [exp] 427 / 1e-143 AT5G60250 338 / 9e-108 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10038341 [exp] 206 / 1e-59 AT4G19670 607 / 0.0 RING/U-box superfamily protein (.1.2) Lus10036202 [exp] 197 / 4e-56 AT4G19670 624 / 0.0 RING/U-box superfamily protein (.1.2) Lus10024093 [exp] 139 / 3e-37 AT3G14250 209 / 2e-66 RING/U-box superfamily protein (.1) Lus10026104 [exp] 140 / 4e-37 AT3G14250 240 / 1e-77 RING/U-box superfamily protein (.1) Lus10000412 [exp] 138 / 3e-36 AT3G14250 228 / 9e-73 RING/U-box superfamily protein (.1) Lus10022063 [exp] 110 / 4e-27 AT3G53690 175 / 3e-53 RING/U-box superfamily protein (.1) Lus10018293 [exp] 86 / 1e-17 AT4G19670 285 / 9e-91 RING/U-box superfamily protein (.1.2) Lus10040616 [exp] 79 / 2e-15 AT4G19670 278 / 3e-88 RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G104700 [exp] 562 / 0 AT5G60250 424 / 4e-141 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.009G150100 [exp] 476 / 1e-163 AT5G60250 378 / 6e-124 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.012G119000 [exp] 191 / 5e-54 AT4G19670 622 / 0.0 RING/U-box superfamily protein (.1.2) Potri.015G117600 [exp] 190 / 9e-54 AT4G19670 661 / 0.0 RING/U-box superfamily protein (.1.2) Potri.001G037200 [exp] 147 / 4e-40 AT3G14250 240 / 3e-78 RING/U-box superfamily protein (.1) Potri.003G187700 [exp] 145 / 4e-39 AT3G14250 242 / 8e-79 RING/U-box superfamily protein (.1) Potri.018G064400 [exp] 135 / 1e-34 AT3G53690 273 / 1e-89 RING/U-box superfamily protein (.1) Potri.006G123500 [exp] 100 / 2e-23 AT3G53690 163 / 1e-48 RING/U-box superfamily protein (.1) Potri.013G120300 [exp] 96 / 5e-22 AT3G53690 158 / 7e-47 RING/U-box superfamily protein (.1) Potri.019G093600 [exp] 93 / 4e-21 AT3G53690 158 / 7e-47 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF01485 [flax] [poplar] IBR IBR domain, a half RING-finger domain
Representative CDS sequence Show only first row Show all	>Lus10036128 pacid=23141095 polypeptide=Lus10036128 locus=Lus10036128.g ID=Lus10036128.BGIv1.0 annot-version=v1.0 ATGGACTTTGGCGGCGGCGGCGGCGGCGGCGGCGACGACCACGATCACCGCATTCACTCTCTTCTCCCCGAGCACTACCACGAGCTCATGGCCGCTCAAT CTCTTGATGCTGACCTCGAATACGCTTACCGCCTCCAACTCCAGGAAGCCATCAACGCTTCCGTCTCCCTCGCTAACGACGGTTCTCTCTCCCGACCTCA CCCGATCCCTGATGATGCCACAGCCTCCACCTCCGGTTCCACTCCCGCCGACGGACTCTTCCGGCAGCAACAGGAACTCACCGATCGGATGAAAGAAGAT CTCGACCTCCGGGCCCACGATCAGATGGTTGCGCAGGAGGAAGATTTTCTTGATTGCGGGGATGACTTCCACATGCCGTTTGGGGAAGGATCCTCCAGAA CCACTGCCAGGAGTAGTACTGAAAGCGGCGTTTTCAGGTTGTATTTCAAGGGTTTGGTCAGCGAAGAGAGGGTTAATGGTCGGAGCTCAATTTTGGCTGG TCTCGGTGTTGCGATATGTGACCCCGCGGGGAATTTGATGATCGAGGTTGCGAAGCCGTTGCATGGACAAAGGAGCAAAGCTGCTGCCGAGATTATGGCT CTCGTTGAAGCCCTCAACCGTGCTCTTGCTATGGATCTCAAAAGGATTGCGGTCTTCTATGATTACTACCCACTTTTTCAGTTTGTTACTGGTAAGTGGC CTCCAAAACAGCGCAAGGTAGCCATGTTAATGAACCAGGTGTCCATTCTGCGTAGAAAATTTACATCGTGCAGTTCTACTATGATCCCCCGATATGCCAT CAGACTTGCATTTAAGCTTGCAAGAGATGCCATATGTTCTCAGGTTGCAGGTCCAGTAGAACCTGTGCGTGGAAAGACATTTAATGAGACTTGTGTCATC TGTTTAGAAGATACTGATGTTGAACGGATGTTTGCAGTTGATCGGTGCAGTCATTGGTTCTGTTTTACGTGCATGAAACAGCATGTTGAGGTTAAGTTAC TTCATGGAATTGTGCCTAAATGTCCTAGCGACGGCTGCAAGATTGAGCTTGAGGTTGGTAGTTGTCAAAAGTTCTTGACACCTAAACTAATTGAAACAAT GCACCTGAGAATAAAGGAAGCTTCAATTCCAGCCACTGAGAAAGTTTATTGTCCATACCCAAAATGCTCTGCACTCATGTCCAAGAAGGACTTATTTGAG TTTTTTGGTTCAGAAAGAAGCAGTACTAAGAAATGCTTAAAATGCCATGGTCTGTTCTGTATCAACTGTAAGGTTCCTTGGCATAGTGGTATGGATTGTG ATCTATACAAAAAAGTTAATCCAAATCCATCAGAAGATGCAAAATTGAAGTTTCTTGCGTCAAGGAATCTGTGGAGACAGTGTATGAAATGCAACCATAT GATTGAACTAGCGGAGGGTTGTTATCACATGACATGCAGATGCGGGAACGAGTTCTGCTACAATTGTGGAGCTGAGTGGAAGGATAAGAAAGCAACATGT TCATGTCCGCTGTGGGACGAAGATAATATTTTGCACGATGATGAAAGGGGATTCTCTGACGATGATGAACTCTTTGATGAGCACGACCATGGAGACTTCT GGGAATCCGATTCTGATGATTACTAA
AA sequence Show only first row Show all	>Lus10036128 pacid=23141095 polypeptide=Lus10036128 locus=Lus10036128.g ID=Lus10036128.BGIv1.0 annot-version=v1.0 MDFGGGGGGGGDDHDHRIHSLLPEHYHELMAAQSLDADLEYAYRLQLQEAINASVSLANDGSLSRPHPIPDDATASTSGSTPADGLFRQQQELTDRMKED LDLRAHDQMVAQEEDFLDCGDDFHMPFGEGSSRTTARSSTESGVFRLYFKGLVSEERVNGRSSILAGLGVAICDPAGNLMIEVAKPLHGQRSKAAAEIMA LVEALNRALAMDLKRIAVFYDYYPLFQFVTGKWPPKQRKVAMLMNQVSILRRKFTSCSSTMIPRYAIRLAFKLARDAICSQVAGPVEPVRGKTFNETCVI CLEDTDVERMFAVDRCSHWFCFTCMKQHVEVKLLHGIVPKCPSDGCKIELEVGSCQKFLTPKLIETMHLRIKEASIPATEKVYCPYPKCSALMSKKDLFE FFGSERSSTKKCLKCHGLFCINCKVPWHSGMDCDLYKKVNPNPSEDAKLKFLASRNLWRQCMKCNHMIELAEGCYHMTCRCGNEFCYNCGAEWKDKKATC SCPLWDEDNILHDDERGFSDDDELFDEHDHGDFWESDSDDY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60250			zinc finger (C3HC4-type RING f...		Lus10036128 [exp]	0	1
AT1G77260			S-adenosyl-L-methionine-depend...		Lus10042762 [exp]	6.2	0.7102
AT4G32290			Core-2/I-branching beta-1,6-N-...		Lus10001503 [exp]	9.3	0.7154
AT3G01960			unknown protein		Lus10012546 [exp]	10.5	0.7020
AT2G02148			unknown protein		Lus10031926 [exp]	15.2	0.6745
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10012517 [exp]	24.6	0.6909
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10011137 [exp]	25.3	0.6973
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10003378 [exp]	27.9	0.6695
AT5G21170		AKINBETA1	5'-AMP-activated protein kinas...		Lus10037424 [exp]	27.9	0.6712
AT5G67620			unknown protein		Lus10011549 [exp]	30.9	0.6777
AT4G03080		BSL1	BRI1 suppressor 1 (BSU1)-like ...		Lus10024771 [exp]	31.6	0.5647

Compare expression of checked genes

Lus10036128 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.