Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13040 530 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G63080 234 / 8e-70 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 231 / 2e-68 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 231 / 2e-68 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63150 230 / 3e-68 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12620 228 / 1e-67 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12775 228 / 3e-67 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 227 / 4e-67 RPF2 rna processing factor 2 (.1) AT1G63070 225 / 1e-66 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G63330 221 / 1e-65 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011646 [exp] 791 / 0 AT1G13040 503 / 1e-175 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10036020 [exp] 226 / 2e-65 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022861 [exp] 217 / 8e-64 AT1G12700 370 / 7e-121 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014245 [exp] 213 / 4e-62 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10029737 [exp] 212 / 6e-61 AT1G63130 424 / 6e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013283 [exp] 207 / 1e-59 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10026558 [exp] 211 / 2e-59 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017684 [exp] 208 / 2e-59 AT4G28010 596 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 208 / 4e-59 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G185000 [exp] 622 / 0 AT1G13040 627 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G046000 [exp] 257 / 6e-78 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G021200 [exp] 230 / 2e-68 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 228 / 1e-67 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046100 [exp] 228 / 2e-67 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050300 [exp] 227 / 3e-67 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.016G025600 [exp] 228 / 8e-67 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050500 [exp] 225 / 1e-66 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046200 [exp] 223 / 6e-66 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034300 [exp] 219 / 7e-66 AT1G62930 397 / 4e-133 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10036129 pacid=23141030 polypeptide=Lus10036129 locus=Lus10036129.g ID=Lus10036129.BGIv1.0 annot-version=v1.0 ATGGGTCTCATCGACAATGCAGTCCATGTGTTCGACGAAATGACTCGGTCCAACTGCCGCCTCTACAACATCGACTACAACAGGTTCATCGGCGTCTTGA TTCGTCACGGTCGTTTCGACTTGGCCCGTGATTATTACTCGAAGATGGCACCGCTGGGCTACTCCCTCTCTGCCTTCACTTACTCCCGCTTCATCTTCAG GTTGTGTCAAGTAATGCACTTTGCTCTTGTTGACGAATTGTTACGCGACATGGAGAGACTTGATCGTTTACCTGATATTTGGGCGTTTAATATATATTTG AATCTTTTGTTTCGTGAAGGTAGGGTAGAATTAGCATTAGAGGTGTTTGATAAAATGGGTCAGAGGGGGAGATTGCCTGACGTTGTAACATACACAATTT TGATCGACGGGTTGTGTAAATTTAATAAGTTGGATAGAGCAGCTCTTCTTTGGAGTGAGATGATAGAAAAGGGTTTTCAACCAGATAATAAGGCATGTGG AGCTCTTGTCGTTGGGTTGTGTGGGGGAGGGAAAGTGGACTTGGCCTATGATCTAATAGTAGGTTGGATGAATAGCGGTCGAGTGGAGTTTACTGCCTTG GTTTATAATGCTTTGATTAGTGGGTTTTGCAAAGCGGGCAAGATTGACAAGGCACTGGCTATTAAATCATTTATGATGAAGAATGGGTGTGTGCCAGATA TAGTTACATACAATGTGTTATTGAACTATTGCTGTGATCGGCTTTTGCTGTCTGAGGCAGAGAAGTTGATGAAGAAGGTGGAGAGCATTGGGATAGGACC TGATGTATATACTTATAACCAATTTCTGAAAGGACTTTGTAAAATCAATCGGTTGGATGAAGCGTATGTGTACTTAGTGAATACTATGGAACCAAAAGGC TTGTGTGATGTTACTTCATACAATACGATAATTGGAGCCTTTTGCAAGTGCAAACAAACTAGTAACGCTTTTGCACTATTTCAGGAGATGAGGCAGAAGA TGATCACACCAGATGTGGTGACATTCACAATACTTATTAGAACGTTCCTTGAGGAAGGTAGTTCTGACGTAGCCAAGAAACTTCTAGACCAGATGACAGG AATGGCTCTCGTTCCTGATCTTATATTTTATACTACTATTATTGATCATCTCTGCAGAAGCGGAAAAGTTAAGGCAGCTCATGGTGTTTTCTCAAATATG ATGGAGCATCAAATTGTGCCAGATGTAATGTCATATAATGCCCTTATTGGTGGGTATTGTAGATCTTTTAAAACAAATGAAGCCATGGATTTATACGAGG AGATGCTGCGTAAGGGATGCCATCCTGATGAAGTAACATACAAATTGCTGATTAAAAGCCTTATAAGGGACAGAGAAATTCCAGTTGCTTGTAGATTGTG GGATCATATGATGGAGAAAGGATTTACACTGGATAGAATTGTTGCGGAAACACTCATTGATGCCATCCATTCAAAATCTTCTATTTGA
AA sequence Show only first row Show all	>Lus10036129 pacid=23141030 polypeptide=Lus10036129 locus=Lus10036129.g ID=Lus10036129.BGIv1.0 annot-version=v1.0 MGLIDNAVHVFDEMTRSNCRLYNIDYNRFIGVLIRHGRFDLARDYYSKMAPLGYSLSAFTYSRFIFRLCQVMHFALVDELLRDMERLDRLPDIWAFNIYL NLLFREGRVELALEVFDKMGQRGRLPDVVTYTILIDGLCKFNKLDRAALLWSEMIEKGFQPDNKACGALVVGLCGGGKVDLAYDLIVGWMNSGRVEFTAL VYNALISGFCKAGKIDKALAIKSFMMKNGCVPDIVTYNVLLNYCCDRLLLSEAEKLMKKVESIGIGPDVYTYNQFLKGLCKINRLDEAYVYLVNTMEPKG LCDVTSYNTIIGAFCKCKQTSNAFALFQEMRQKMITPDVVTFTILIRTFLEEGSSDVAKKLLDQMTGMALVPDLIFYTTIIDHLCRSGKVKAAHGVFSNM MEHQIVPDVMSYNALIGGYCRSFKTNEAMDLYEEMLRKGCHPDEVTYKLLIKSLIRDREIPVACRLWDHMMEKGFTLDRIVAETLIDAIHSKSSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13040			Pentatricopeptide repeat (PPR-...		Lus10036129 [exp]	0	1
AT5G58130		ROS3	REPRESSOR OF SILENCING 3, RNA-...		Lus10028101 [exp]	10.8	0.7662
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Lus10019735 [exp]	11.4	0.8002
AT5G45610		SUV2	SENSITIVE TO UV 2, protein dim...		Lus10010424 [exp]	11.5	0.8354
AT1G63810			unknown protein		Lus10026014 [exp]	13.9	0.8493
AT2G18220			Noc2p family (.1)		Lus10027010 [exp]	18.4	0.8424
AT3G11964			RNA binding;RNA binding (.1)		Lus10016216 [exp]	32.4	0.8264
AT3G63370		OTP86	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10004081 [exp]	33.5	0.7488
AT4G19610			nucleotide binding;nucleic aci...		Lus10018277 [exp]	33.6	0.8090
AT5G27395			Mitochondrial inner membrane t...		Lus10035347 [exp]	34.6	0.7856
AT5G09580			unknown protein		Lus10007099 [exp]	34.6	0.7812

Compare expression of checked genes

Lus10036129 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.