Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF02121 [flax] [poplar] IP_trans Phosphatidylinositol transfer protein
Representative CDS sequence Show only first row Show all	>Lus10036131 pacid=23141134 polypeptide=Lus10036131 locus=Lus10036131.g ID=Lus10036131.BGIv1.0 annot-version=v1.0 ATGCCCATGTCCGTTGAAGAGTATCAGGTGGCGCAGATGTACATGGTGATGAGGATGCAGCAGCAGAACACTACAGGCTCTGAGGGTGTTCAAGTCCTCG ACAACAGACCTGTTCTTGATGATGAGATGGGCAAATCCCAGTACACTTCTAAACTCTATCGATTCCAGAGCAAAGCACCCACTTGGCTTTCAGCTTTTGC ATCCTTGGACTCTCTGATCATGAAAGAAGAAGCCTGGAATTCATACCCAAGATGCAAAACTGGTTTGTGCCTCTATTCTTTTTCTGGAAAAATATGTATT CCCCTTCTGTGTCTTCACCCTATTCAATTTATTTCTTCTTCTGATGCATTGACTCTCTTTTGTTGTTCATTGTGGATGGATGTTTACCAATCAGTAATCA AGTGTCCATACTTTAGCAAATTCTGCTTAACCGTGGATACAATTCATAAAGCTGACAACGGACAATCAGAAAATGTGCACGGTTTAAACAAAGAACAACT AGCTGCTAGAGAGGTTGAAATTGTCGATATAGCTTCCGCAGCGAGAGACTATTGGAGTTACATTGTTGGCAGCAACAATACAGATTTCTCAACTTTTAAG TCAGCTAGAACAGGCCGTGGACCACTTTTGGAAGGATGGCAGAGTAAAAGTAACCCTGTGATGACAGCATATAAGTTGGTAATAGTGGATGCGCCCTACT GGGGTTTCGGTTACAGACTTGAACAAGCATTAATGGCGGGAGAAAGGGCTTTGTTCTTGGAGAGTCATCGAAACTGTTTTACTTGGATTGATGAATGGTT TGGGATGACGATACAAGAAATACGCGAACTCGAATTAAAGAGTGATTCTACGTTAAACCAGATGAAGTCGGTAGAGGAATTTGTAGTGCAACTTGCGTCT GGTTTATGGAACAAATGTGTTAATCTGTTTAAAGCCTGCTACATCCATGTTTAG
AA sequence Show only first row Show all	>Lus10036131 pacid=23141134 polypeptide=Lus10036131 locus=Lus10036131.g ID=Lus10036131.BGIv1.0 annot-version=v1.0 MPMSVEEYQVAQMYMVMRMQQQNTTGSEGVQVLDNRPVLDDEMGKSQYTSKLYRFQSKAPTWLSAFASLDSLIMKEEAWNSYPRCKTGLCLYSFSGKICI PLLCLHPIQFISSSDALTLFCCSLWMDVYQSVIKCPYFSKFCLTVDTIHKADNGQSENVHGLNKEQLAAREVEIVDIASAARDYWSYIVGSNNTDFSTFK SARTGRGPLLEGWQSKSNPVMTAYKLVIVDAPYWGFGYRLEQALMAGERALFLESHRNCFTWIDEWFGMTIQEIRELELKSDSTLNQMKSVEEFVVQLAS GLWNKCVNLFKACYIHV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10036131 [exp]	0	1
AT2G43320			S-adenosyl-L-methionine-depend...		Lus10015953 [exp]	4.0	0.9417
AT3G19230			Leucine-rich repeat (LRR) fami...		Lus10010528 [exp]	4.0	0.9390
AT4G30600			signal recognition particle re...		Lus10035066 [exp]	4.6	0.9524
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Lus10038361 [exp]	5.7	0.9361
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10015519 [exp]	11.2	0.9353
AT4G12790			P-loop containing nucleoside t...		Lus10041086 [exp]	11.3	0.9282
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10037630 [exp]	11.5	0.9180
AT4G18360			Aldolase-type TIM barrel famil...		Lus10023302 [exp]	13.3	0.9396
AT4G25770			alpha/beta-Hydrolases superfam...		Lus10006982 [exp]	13.6	0.9386
AT5G15270			RNA-binding KH domain-containi...		Lus10036767 [exp]	16.3	0.9290

Compare expression of checked genes

Lus10036131 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.