Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60200 106 / 8e-27 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT2G28510 99 / 5e-24 DOF AtDof2,1 Dof-type zinc finger DNA-binding family protein (.1) AT2G37590 96 / 2e-22 DOF AtDof2. 4, ATDOF2.4 DNA binding with one finger 2.4 (.1) AT5G02460 95 / 7e-22 DOF AtDof5. 1 Dof-type zinc finger DNA-binding family protein (.1) AT5G62940 95 / 7e-22 DOF AtDof5.6, HCA2 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) AT2G28810 94 / 1e-21 DOF AtDof2. 2 Dof-type zinc finger DNA-binding family protein (.1.2) AT1G07640 94 / 1e-21 DOF OBP2, AtDof1. 1 Dof-type zinc finger DNA-binding family protein (.1.2.3) AT5G65590 93 / 2e-21 DOF AtDof5,7 Dof-type zinc finger DNA-binding family protein (.1) AT3G52440 91 / 4e-21 DOF AtDof3,5 Dof-type zinc finger DNA-binding family protein (.1) AT3G45610 91 / 4e-21 DOF DOF6, AtDof3,2 DOF transcription factor 6, Dof-type zinc finger DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042114 [exp] 92 / 6e-23 AT5G62940 149 / 7e-45 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10002381 [exp] 97 / 1e-22 AT5G62940 166 / 4e-48 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10016566 [exp] 96 / 2e-22 AT3G55370 160 / 2e-46 OBF-binding protein 3 (.1.2.3) Lus10029458 [exp] 96 / 2e-22 AT3G55370 161 / 6e-47 OBF-binding protein 3 (.1.2.3) Lus10005956 [exp] 96 / 3e-22 AT3G55370 174 / 8e-52 OBF-binding protein 3 (.1.2.3) Lus10040836 [exp] 92 / 5e-22 AT2G37590 142 / 2e-41 DNA binding with one finger 2.4 (.1) Lus10029767 [exp] 94 / 6e-22 AT3G52440 145 / 2e-42 Dof-type zinc finger DNA-binding family protein (.1) Lus10014002 [exp] 92 / 7e-22 AT5G60200 124 / 7e-35 TARGET OF MONOPTEROS 6 (.1) Lus10025340 [exp] 95 / 1e-21 AT2G37590 182 / 4e-54 DNA binding with one finger 2.4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G084200 [exp] 97 / 1e-22 AT2G37590 160 / 2e-46 DNA binding with one finger 2.4 (.1) Potri.007G058200 [exp] 97 / 2e-22 AT5G65590 192 / 1e-58 Dof-type zinc finger DNA-binding family protein (.1) Potri.010G205400 [exp] 96 / 3e-22 AT2G37590 137 / 7e-38 DNA binding with one finger 2.4 (.1) Potri.012G081300 [exp] 95 / 4e-22 AT5G62940 194 / 3e-59 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Potri.001G238400 [exp] 95 / 4e-22 AT3G55370 160 / 9e-47 OBF-binding protein 3 (.1.2.3) Potri.005G149100 [exp] 95 / 6e-22 AT5G65590 197 / 1e-60 Dof-type zinc finger DNA-binding family protein (.1) Potri.015G048300 [exp] 94 / 7e-22 AT5G60850 152 / 1e-43 OBF binding protein 4 (.1) Potri.009G029500 [exp] 94 / 8e-22 AT5G02460 154 / 1e-43 Dof-type zinc finger DNA-binding family protein (.1) Potri.005G134200 [exp] 94 / 1e-21 AT5G60200 124 / 2e-33 TARGET OF MONOPTEROS 6 (.1) Potri.012G063800 [exp] 93 / 2e-21 AT5G60850 137 / 9e-38 OBF binding protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [flax] [poplar] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Lus10036132 pacid=23141075 polypeptide=Lus10036132 locus=Lus10036132.g ID=Lus10036132.BGIv1.0 annot-version=v1.0 ATGGCGGAGAGCATGGTGACAAGTAGTACACATAATAGAAATAATATCCAATCGGCCGGGAAGGCGGCGAAAGCGGCACAGCCGCCGGAACAAGCGCTGA AATGCCCTCGGTGCGAGTCAACAAACACGAAATTCTGCTACTACAACAACTACAGCCTCACACAACCTCGATACTTCTGCAAATCATGCCGCCGCTACTG GACTAAAGTCCGCACCGTCCCGGGGGGCGGTGGCTGCCGCAAGTCCACCACCAAGCGTTCTTCTTCCTCTGGAAGGCGCATGACTACTACTGGTGCTGAT CAGGACTCCCAATTGAGCATGCCAATAATGCCCCTCACAGGCTTCCTCACGTCCTCGGCATACGACTCCAACGACCTCTCATTAGCCTTCGCCAGGCTTC AAAAGCAGCAGTATCAGATAGGGTTCGACGAGGACACTACTATTGCTACTAATACCCCTACTAGTACTAGTACTAGTACGCCGCCAGGGTTTCTGGAGGC GCTAAGGAGCAGTTTTCTCCATACAGCGGGCCCTAATGGTAATTTCTCATATAATTACGGAGATGACGACCAAGGGTATAGTGGGAATAACAACAACAAC AACAACAACGGGATCATGAGCTTTCAGAATGATCAAATGATGGGAATTCATAAGGAGGAGTACTTGGAAGAAAGCAGCAATAGTGCTAATACAAATGGGA AGGGAATGTTGTGGGGATTATTGCCACCAAACTGGCAGATGATGAATTACAATTATGGGCTTAATCAGCATCAATATGGGACCATTACTACTACTACTAC TACTGATCATCATCATGAAACAGCGGGAAGCAATGCTAATGAGGGCAGCGGCGGGTGGTGGAATAGTGGTAATATTAATGCTGCAGGAGGAGGAGGAGGT GGCCTTGGTGGTGGCTCCGCCGCTAATTGGCATAATGCTGCTACCGGCGGTGGCCTTGTAAACACCAGTGCACTCATGTGA
AA sequence Show only first row Show all	>Lus10036132 pacid=23141075 polypeptide=Lus10036132 locus=Lus10036132.g ID=Lus10036132.BGIv1.0 annot-version=v1.0 MAESMVTSSTHNRNNIQSAGKAAKAAQPPEQALKCPRCESTNTKFCYYNNYSLTQPRYFCKSCRRYWTKVRTVPGGGGCRKSTTKRSSSSGRRMTTTGAD QDSQLSMPIMPLTGFLTSSAYDSNDLSLAFARLQKQQYQIGFDEDTTIATNTPTSTSTSTPPGFLEALRSSFLHTAGPNGNFSYNYGDDDQGYSGNNNNN NNNGIMSFQNDQMMGIHKEEYLEESSNSANTNGKGMLWGLLPPNWQMMNYNYGLNQHQYGTITTTTTTDHHHETAGSNANEGSGGWWNSGNINAAGGGGG GLGGGSAANWHNAATGGGLVNTSALM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10036132 [exp]	0	1
AT3G22440			FRIGIDA-like protein (.1)		Lus10010560 [exp]	1.0	0.9119
AT2G30933			Carbohydrate-binding X8 domain...		Lus10001516 [exp]	2.8	0.8957
AT3G11590			unknown protein		Lus10017001 [exp]	2.8	0.8716
AT3G52490			Double Clp-N motif-containing ...		Lus10028849 [exp]	5.2	0.8865
AT3G50700	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1...		Lus10041723 [exp]	6.0	0.7879
AT2G44830			Protein kinase superfamily pro...		Lus10028208 [exp]	7.0	0.8568
AT1G76660			unknown protein		Lus10016050 [exp]	8.5	0.8615
AT5G57480			P-loop containing nucleoside t...		Lus10025479 [exp]	9.8	0.8300
AT1G62050			Ankyrin repeat family protein ...		Lus10002942 [exp]	10.0	0.8622
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10013476 [exp]	13.0	0.8385

Compare expression of checked genes

Lus10036132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.