Plant FIBer expression Database

Lus10036134 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G60190 219 / 3e-72 Cysteine proteinases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G002700
[exp]
187 / 1e-59 AT5G60190 176 / 4e-55 Cysteine proteinases superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0125 Peptidase_CA PF02902 Peptidase_C48 Ulp1 protease family, C-terminal catalytic domain
Representative CDS sequence
>Lus10036134 pacid=23141256 polypeptide=Lus10036134 locus=Lus10036134.g ID=Lus10036134.BGIv1.0 annot-version=v1.0
ATGAGCAGATCCAACGCCCGCGACGAAATCATACTCAGCTACAGCGATGGAGTTCTCCGGCAATCCGATTTGAACATTCTGAGCGGCCGGCACTTCTTAA
ACGACAGAATCATGGAATTCTACTTGAGCCACCTGTCCTCATCCACCGCAGCTTCTTCGCAGGATGTCCTTTTGGTTCCGCCGGTGATGGCATTCTGGAT
ATCCAACTGCCCGGACTCCAGCACCCTCAGAGACGTGACGGAGCCACTGAATCTTGCGGAGAGGCAGCTCGTTCTCTTCCCAGTGAACAACAACGACAAC
GTGGAGGTTGCGGAGGGCGGGTCCCACTGGAGCCTACTGGCTTACCACAGGGGAAGAAACCTCTTCGTCCACCACGACAGCTTGGGAGATATGAAGATGA
ACAAGCGACCAGCGAGGCAGCTATACCGGGCGGTGGCTGGGCTGATGGGAACGGCGGCAGCAGGCTACATGGAAGCCCCCGATTCGCCCCGCCAGCAAAA
CGGTTACGACTGTGGATTGTTTGTTCTTGCAATAGCTAGAGCGATTTCCGGTTGGTATAATGATAAAAGAGATGACGGAGGGCTTTGGTTTTCAACGGTG
AACGAGCAGGTGAGGCCTGTTGCAGTTGGCCAATTGAGGGGTGAAATTCTGGATCTGATAAGGAGCATGATGGAGATTAAGGCTTGA
AA sequence
>Lus10036134 pacid=23141256 polypeptide=Lus10036134 locus=Lus10036134.g ID=Lus10036134.BGIv1.0 annot-version=v1.0
MSRSNARDEIILSYSDGVLRQSDLNILSGRHFLNDRIMEFYLSHLSSSTAASSQDVLLVPPVMAFWISNCPDSSTLRDVTEPLNLAERQLVLFPVNNNDN
VEVAEGGSHWSLLAYHRGRNLFVHHDSLGDMKMNKRPARQLYRAVAGLMGTAAAGYMEAPDSPRQQNGYDCGLFVLAIARAISGWYNDKRDDGGLWFSTV
NEQVRPVAVGQLRGEILDLIRSMMEIKA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G60190 Cysteine proteinases superfami... Lus10036134
[exp]
0 1
AT5G09995 unknown protein Lus10035858
[exp]
7.3 0.7585
AT3G44610 Protein kinase superfamily pro... Lus10020572
[exp]
14.3 0.7711
AT3G52610 unknown protein Lus10022699
[exp]
19.4 0.7370
AT2G37400 Tetratricopeptide repeat (TPR)... Lus10024433
[exp]
25.8 0.7584
AT1G07780 TRP6, PAI1 TRANSIENT RECEPTOR POTENTIAL 6... Lus10028971
[exp]
29.4 0.7214
AT5G20720 CHCPN10, ATCPN2... CHLOROPLAST CHAPERONIN 10, cha... Lus10021244
[exp]
29.9 0.6975
AT4G28730 GrxC5 glutaredoxin C5, Glutaredoxin ... Lus10011915
[exp]
31.0 0.7434
AT1G74520 ATHVA22A HVA22 homologue A (.1) Lus10008623
[exp]
32.0 0.7479
AT5G27440 unknown protein Lus10041604
[exp]
35.7 0.7044
AT2G28190 CZSOD2, CSD2 copper/zinc superoxide dismuta... Lus10016155
[exp]
37.9 0.7421

Lus10036134 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.