Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07630 432 / 3e-151 AtADT2, ADT2 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2) AT1G11790 380 / 9e-131 AtADT1, ADT1 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) AT1G08250 374 / 8e-128 AtADT6, ADT6 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) AT2G27820 367 / 6e-125 ADT3, PD1 arogenate dehydratase 3, prephenate dehydratase 1 (.1) AT3G44720 345 / 2e-116 ADT4 arogenate dehydratase 4 (.1) AT5G22630 327 / 2e-109 ADT5 arogenate dehydratase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018128 [exp] 610 / 0 AT3G07630 456 / 5e-160 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2) Lus10019526 [exp] 372 / 5e-127 AT1G08250 602 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10043369 [exp] 372 / 5e-127 AT1G08250 599 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10020549 [exp] 372 / 6e-127 AT1G08250 602 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10009396 [exp] 370 / 2e-126 AT1G08250 607 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10031547 [exp] 362 / 1e-123 AT1G11790 437 / 3e-153 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Lus10015130 [exp] 359 / 7e-123 AT1G11790 434 / 4e-152 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Lus10015561 [exp] 329 / 4e-111 AT1G11790 437 / 3e-153 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Lus10020035 [exp] 321 / 8e-108 AT1G11790 426 / 5e-149 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G195500 [exp] 471 / 1e-166 AT3G07630 504 / 2e-179 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2) Potri.011G004700 [exp] 397 / 2e-137 AT1G11790 527 / 0.0 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Potri.004G013400 [exp] 388 / 1e-133 AT1G11790 513 / 0.0 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Potri.004G188100 [exp] 372 / 7e-127 AT1G08250 612 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Potri.009G148800 [exp] 372 / 1e-126 AT1G08250 606 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [flax] [poplar] ACT PF01842 [flax] [poplar] ACT ACT domain CL0177 [flax] [poplar] PBP PF00800 [flax] [poplar] PDT Prephenate dehydratase
Representative CDS sequence Show only first row Show all	>Lus10036135 pacid=23141173 polypeptide=Lus10036135 locus=Lus10036135.g ID=Lus10036135.BGIv1.0 annot-version=v1.0 ATGGCAGCATTCGTGACGCGATCCTTAACTGTGCCACTCCCCGGCCAAATCTCCGTTAAACCCTCTCGCTCTGATCAATCGGCGACGGTGCTAGTTTTTG TAAGACGGCGCTCATGTGTGTCAGTCCGGTCCTCTGTCCGCGGGAACACCAATAACTTTTACGAGGGTAAGAATGACACACAAGCGTTGGAGTTGAAGGT TGATGATTCTGCCGCTGCTGCTGCATGCGATGCTCTCACCACGGATTCCCTTCCTAGGCCTTTGACGTCGGCTCGAGTGTCTGATTCGGGCTCAAGTGGT TCTCGATTGCGAGTTGCATATCAGGGGGTTTCTGGGGCATATAGCGAGTCTGCTGCACAAAAGGCATATCCGAACTGTGAGGCGGTACCTTGTGATCAAT TTGAAACGGCTTTTGAAGCTGTTGAAGGGTGGACTGTTGACAGAGCAGTCTTACCTATTGAAAACTCTTTAGGTGGGAGTATCCACAGAAATTATGACCT CTTGCTCCGTCACAGGCTACATATTGTTGGAGAGATTAAATATGCTGTTCGCCATTGCTTGCTAGCTAATCAAGGTGTTAAAATTGAAGACTTGAAGAGG GTTCTGAGTCATCCCCAGGCTCTTGCTCAATGTGAATATACGTTGATGCAATTGGGATTGGTGAGAGAAGCAGTGGATGATACTGCTGGTGCAGCGAAGT ATGTTGCACTCAGCAAATTGAAGGACACGGGAGCTGTTGCCAGTTCTGCTGCTGCAACAATCTACGGCTTAGATATATTAGAAGAAGACATTCAGGATGA CTCAGACAATGTCACAAGATTTCTGATGTTGGCGAGAGAACCCATAATTCCGGGCACTGACCGTCCTTTTAAGACAAGTATAGTGTTCTCGCTGGAGGAG GGCCCTGGAATTCTTTTCAAGGCTCTTGCAGTTTTTGCTCTGAGGCAAATCAACCTAACCAAAATCGAGAGCCGTCCTTGGAAGCGGAGGTCTCCTAGAG CTCCTGGAGACAACGGCAATGGACTTCAAAAATGCTTCCACTATCTTTTCTATGTGGATTTTGAGGCGTCAATGGCTAGTGATAACGCTCAGAATGCCCT GAAGCATCTGAACGTGCGTCTTCCATTACCCAGTGCACAGTAA
AA sequence Show only first row Show all	>Lus10036135 pacid=23141173 polypeptide=Lus10036135 locus=Lus10036135.g ID=Lus10036135.BGIv1.0 annot-version=v1.0 MAAFVTRSLTVPLPGQISVKPSRSDQSATVLVFVRRRSCVSVRSSVRGNTNNFYEGKNDTQALELKVDDSAAAAACDALTTDSLPRPLTSARVSDSGSSG SRLRVAYQGVSGAYSESAAQKAYPNCEAVPCDQFETAFEAVEGWTVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEIKYAVRHCLLANQGVKIEDLKR VLSHPQALAQCEYTLMQLGLVREAVDDTAGAAKYVALSKLKDTGAVASSAAATIYGLDILEEDIQDDSDNVTRFLMLAREPIIPGTDRPFKTSIVFSLEE GPGILFKALAVFALRQINLTKIESRPWKRRSPRAPGDNGNGLQKCFHYLFYVDFEASMASDNAQNALKHLNVRLPLPSAQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07630		AtADT2, ADT2	Arabidopsis thaliana arogenate...		Lus10036135 [exp]	0	1
AT2G39805			Integral membrane Yip1 family ...		Lus10030159 [exp]	4.5	0.7570
AT5G03470		ATB' ALPHA, ATB...	Protein phosphatase 2A regulat...		Lus10023920 [exp]	5.5	0.7708
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10031976 [exp]	8.8	0.7396
AT5G03470		ATB' ALPHA, ATB...	Protein phosphatase 2A regulat...		Lus10014417 [exp]	9.8	0.7459
AT4G01810			Sec23/Sec24 protein transport ...		Lus10010078 [exp]	12.4	0.7210
AT3G26670			Protein of unknown function (D...		Lus10041504 [exp]	16.4	0.7549
AT1G21660			Chaperone DnaJ-domain superfam...		Lus10018854 [exp]	18.0	0.7411
AT5G11700			unknown protein		Lus10043045 [exp]	20.5	0.7402
AT1G74860			unknown protein		Lus10036649 [exp]	24.2	0.7281
AT5G46630			Clathrin adaptor complexes med...		Lus10040086 [exp]	25.7	0.7292

Compare expression of checked genes

Lus10036135 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.