Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45630 494 / 1e-158 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT2G28540 469 / 6e-150 RNA binding (RRM/RBD/RNP motifs) family protein (.1), RNA binding (RRM/RBD/RNP motifs) family protein (.2) AT5G60170 470 / 3e-149 RNA binding (RRM/RBD/RNP motifs) family protein (.1), RNA binding (RRM/RBD/RNP motifs) family protein (.2) AT1G74870 65 / 4e-11 RING/U-box superfamily protein (.1) AT3G48070 65 / 6e-11 RING/U-box superfamily protein (.1.2) AT5G62910 65 / 6e-11 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018126 [exp] 1818 / 0 AT3G45630 774 / 0.0 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10036140 [exp] 1612 / 0 AT5G60170 491 / 7e-158 RNA binding (RRM/RBD/RNP motifs) family protein (.1), RNA binding (RRM/RBD/RNP motifs) family protein (.2) Lus10018125 [exp] 1547 / 0 AT3G45630 504 / 1e-163 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10042156 [exp] 63 / 4e-10 AT5G62910 218 / 1e-68 RING/U-box superfamily protein (.1) Lus10004246 [exp] 63 / 6e-10 AT5G62910 215 / 2e-67 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G026200 [exp] 999 / 0 AT3G45630 812 / 0.0 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.016G084700 [exp] 613 / 0 AT2G28540 446 / 1e-141 RNA binding (RRM/RBD/RNP motifs) family protein (.1), RNA binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G132300 [exp] 590 / 0 AT3G45630 437 / 8e-138 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G074500 [exp] 61 / 2e-09 AT3G48070 204 / 3e-63 RING/U-box superfamily protein (.1.2) Potri.015G069400 [exp] 60 / 4e-09 AT3G48070 199 / 2e-61 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10036138 pacid=23141197 polypeptide=Lus10036138 locus=Lus10036138.g ID=Lus10036138.BGIv1.0 annot-version=v1.0 ATGAGCGACCAGGGAGACAAGACCTGCCCACTTTGTGCCGAGGAGATGGATCTGACTGATCAGCAATTGAAGCCTTGCAAATGTGGCTACGAGATATGTG TTTGGTGTTGGCATCATATAATGGACATGGCTGAGAAGGATGCCTCTGAGGGCCGGTGTCCTGCATGCCGCACTCCATATGACAAGGAGAAGATAGTAGG GACAGGACCAAATGAGAGATTGGTATCTGAAATCAATGAGCGGAAAAAGTCACAGAAGTCAAAGATGAAACCCTCAGAGGGGAGGAAACAGCTTAGCAGT GTGCGAGTTATCCAACGGAATCTTGTGTATATAGTTGGGCTACCTGTGAACTTTGCAGATGAGGATCTTCTCCAGCGAAGGGAATATTTTGGCCAGTATG GAAAAGTCTTGAAGGTATCAATGTCACGGACAGCAACTGGAGTTGTTCAGCAGTTTCCTAATAATACTTGTAGTGTATATATTACTTACGGAAAGGAGGA CGAAGCAATTCGCTGCATTCAGTCTGTACATGGCTTTGTCTTGGATGGTAGATCATTAAAGGCATGCTTTGGAACTACAAAGTATTGTCATGCTTGGCTG AGAAATATGCACCAGTTTGATGTGATCGGCACTTTTGTTCAAATCCAGCCCTGCACCAATTCTGATTGTCTATACTTGCATGAGGTTGGATCTCAAGAAG ATAGTTTCACAAAAGATGAGATCGTGTCAGCTTATACAAGGAGTAGGGTGCAACAGATGACTGCTGGAACCAGTAATTTGGCCCGACGTTCTGGGAGTAT GTTGCCACCTCCAGCTCTTGATTATTCTCATGACACCTCAGCCTCTGCCCTCATGAAAAGTTCAACAAATAGCACTGTGGGTGCTAGTTGCAAAGGCTCA CCTCCTAATGGGAGTTGTAGTAGATCTGGTGCTCTTCCAGCTGCAGCCTCATGGGGAATGCGTGCTTCAAACCAGCCATCCAAGCCCAAGCCAAAGCCAA AGCCAATGGCTGATACAGTTGCAAGCACTGTTCGGTTTCCAGCGACAATGATTCAGTCTTCTGCAGCAGTTGGTGATACGAAGGCAACTTGTATTGAAGA TGGTCAATCAATAAACAGTAAAGCCAAACCTGATTTGTTAAGACCTATTAAACAGCATGGCAGAGGAGATCCCTGTCCTATCATGGCTGAGAAGGCTTCT ATAAATGACAGTGGTGATAGTACTGAATTACCTAAAGACTGGGAAACAGCTGATGTTTCAAGCGTGAGGAGTTCTCAGCCATTTAGTTGTGATCAAGACG GGCTTTCAATTGCTGATGAGACACTTTCAAGTTTATGTCCTGAAGTGAAGATAGATAGTGTTGCCAGAAGTGAGACATCTATGGCAATGACTAGAAGTGG CAGCATTCTTTCAGAGAATAATGCAGTCAAATCACATAATGGTCAGAAACATGATGATCAGTACGGACAGTCTGTAGCTTCTACAGCCTGTAAGCCTGCT GCCAATGGTGTATTTATTTCAAGAGAAGTAAATGATTCGAAAATGGAACCGCAGGCTCAAGCCATTTCAAGCAGTGTTTGTGAGCTGGAAGAGGATTTAT TATCGTTTGATAATCAGAGACTGAGCGATCCAGAGGTGGTCAGCCATACATCGTATTTGCCAAGTACAGCGAACTCTGTACAGACAGCTGATGATTCTTG GTCAACTCCATTGCAGCGTAGTGATGCTTTAGATGTAAAGGGTGATTCTTTATTTCTAGATAGTAGAAATGGTGATCGTCTGATGAGAAATATGTCTTGC GATGCTATCATGCGAAATGGATACCCCGAGAAATTGACAAATAATAGCTCTACTGTGTTGGATAGAAATGGAGAACACCGATTTGTGCTTCCTGGCCAAG GTGAAGGGAAACACTGGGGAATACTACAATGTGAAAGTGATGGTAATGCAGCACTTGATGCTGGTGAGAGTAGTATAATTTCAGATATACTATCTCTAGA CCTGGATGGATGGGATGAGTCGTTAACTTCTCCTCAAAACTTAGCTAAACTTTTGGGCGATTCAGGAAAACAAACCAGTTCTCTGAAGATGTCCAATTCC TGGAAAGCTCAAAGTAACAAGCAGTCTAAGTTCTCTTTTGCTAGGCAGCCGGAGTCTATGAACCATGGAATTGATGCCGATAATTCCTTTATTGGGTTGG GACAGATGCCAAGGAATCATCCGTTTAATCATGATCTCTTGGAAAGCAGAAATGCTTATATGGACAATCATGTACCGAGTAATGGTTTCTTGACAAGTAT TGTGGATGAACCAAATAACTTTCTGGGTGGCATTCCATCTTTCCCATCGAGTAATGCTCCAGGTTCGCGAGCTCAAATATCGGCACCCCCAGGGTTTACT GTGCCTAGAGCACCACCACCAGGCTTTTCTTCTCACGAAAGAACGGACCATACCTTTGATTCCATGTTAGTTAATTGTATACGAGCTGCAGGAAATCAGT TGCTGGAGACACCTTCGTTGTACAGAAGCTCATACCATGCTCCTCCAATGACTGGAAGCACGGGAAGCACAGTAGACATTGAATTAATTGATCCTGCAAT TTTGGCCGTTGGTAAGGGGAGATTGCAAGGGGGGCTTAGTAGTGGTAACCACCCAGGTTTAGACTTTAGATCAAATTTCCAACAACAATTAGGAATGTTT GAGAATGAAGCCAGACTTCAACTACTCATGCAGAGATCTCAGCAACAGCAACAGCAACAGCAACAGCAACAACAGAACCTACGGTATGCTGCTGAACTTG GGGGTAGCTTTTCTACTGCCCCTGAATCTTACGGCATTTCTTCAAGGATAGCTGATCAGCTGCAAATGAACAATAATCAGTCTGCCTTTGCAAAACTCTC CCACTCACAGTCTAGGAATGGAGTTGTGTCAAATGGACATTGGGATAATCATAATACTAGTTGGAATGAAGTTCAGGGTGGGAACAGTATGGGTATGGCA GAGCTACTAAGGAACGAGAGACTGGGAGGGTTGAACAAGTTTTACACTGCAGGTTATGATGATTCTAAATATCGGATGCCGAGTTCGGGTGACTTTTACA ACAGGACATTTGAGATGTGA
AA sequence Show only first row Show all	>Lus10036138 pacid=23141197 polypeptide=Lus10036138 locus=Lus10036138.g ID=Lus10036138.BGIv1.0 annot-version=v1.0 MSDQGDKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDASEGRCPACRTPYDKEKIVGTGPNERLVSEINERKKSQKSKMKPSEGRKQLSS VRVIQRNLVYIVGLPVNFADEDLLQRREYFGQYGKVLKVSMSRTATGVVQQFPNNTCSVYITYGKEDEAIRCIQSVHGFVLDGRSLKACFGTTKYCHAWL RNMHQFDVIGTFVQIQPCTNSDCLYLHEVGSQEDSFTKDEIVSAYTRSRVQQMTAGTSNLARRSGSMLPPPALDYSHDTSASALMKSSTNSTVGASCKGS PPNGSCSRSGALPAAASWGMRASNQPSKPKPKPKPMADTVASTVRFPATMIQSSAAVGDTKATCIEDGQSINSKAKPDLLRPIKQHGRGDPCPIMAEKAS INDSGDSTELPKDWETADVSSVRSSQPFSCDQDGLSIADETLSSLCPEVKIDSVARSETSMAMTRSGSILSENNAVKSHNGQKHDDQYGQSVASTACKPA ANGVFISREVNDSKMEPQAQAISSSVCELEEDLLSFDNQRLSDPEVVSHTSYLPSTANSVQTADDSWSTPLQRSDALDVKGDSLFLDSRNGDRLMRNMSC DAIMRNGYPEKLTNNSSTVLDRNGEHRFVLPGQGEGKHWGILQCESDGNAALDAGESSIISDILSLDLDGWDESLTSPQNLAKLLGDSGKQTSSLKMSNS WKAQSNKQSKFSFARQPESMNHGIDADNSFIGLGQMPRNHPFNHDLLESRNAYMDNHVPSNGFLTSIVDEPNNFLGGIPSFPSSNAPGSRAQISAPPGFT VPRAPPPGFSSHERTDHTFDSMLVNCIRAAGNQLLETPSLYRSSYHAPPMTGSTGSTVDIELIDPAILAVGKGRLQGGLSSGNHPGLDFRSNFQQQLGMF ENEARLQLLMQRSQQQQQQQQQQQQNLRYAAELGGSFSTAPESYGISSRIADQLQMNNNQSAFAKLSHSQSRNGVVSNGHWDNHNTSWNEVQGGNSMGMA ELLRNERLGGLNKFYTAGYDDSKYRMPSSGDFYNRTFEM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60170			RNA binding (RRM/RBD/RNP motif...		Lus10036138 [exp]	0	1
AT4G33210		SLOMO	SLOW MOTION, F-box family prot...		Lus10026472 [exp]	2.8	0.9092
AT4G33210		SLOMO	SLOW MOTION, F-box family prot...		Lus10038067 [exp]	4.2	0.8893
AT1G72390			unknown protein		Lus10013169 [exp]	6.0	0.8737
AT3G62900			CW-type Zinc Finger (.1)		Lus10009815 [exp]	6.6	0.9016
AT2G47390			Prolyl oligopeptidase family p...		Lus10025026 [exp]	11.0	0.8478
AT2G44900		ARABIDILLO-1, A...	F-box Armadillo protein 1, ARA...		Lus10028197 [exp]	13.2	0.8675
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Lus10036371 [exp]	18.5	0.8633
AT3G62900			CW-type Zinc Finger (.1)		Lus10040919 [exp]	18.7	0.8501
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10032139 [exp]	19.0	0.8628
AT5G24320			Transducin/WD40 repeat-like su...		Lus10007783 [exp]	25.5	0.7767

Compare expression of checked genes

Lus10036138 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.