Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45630 477 / 8e-153 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT2G28540 454 / 3e-145 RNA binding (RRM/RBD/RNP motifs) family protein (.1), RNA binding (RRM/RBD/RNP motifs) family protein (.2) AT5G60170 454 / 4e-144 RNA binding (RRM/RBD/RNP motifs) family protein (.1), RNA binding (RRM/RBD/RNP motifs) family protein (.2) AT1G74870 65 / 5e-11 RING/U-box superfamily protein (.1) AT5G62910 65 / 7e-11 RING/U-box superfamily protein (.1) AT3G48070 65 / 8e-11 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018125 [exp] 1640 / 0 AT3G45630 504 / 1e-163 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10018126 [exp] 1598 / 0 AT3G45630 774 / 0.0 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10036138 [exp] 1586 / 0 AT5G60170 745 / 0.0 RNA binding (RRM/RBD/RNP motifs) family protein (.1), RNA binding (RRM/RBD/RNP motifs) family protein (.2) Lus10042156 [exp] 63 / 4e-10 AT5G62910 218 / 1e-68 RING/U-box superfamily protein (.1) Lus10004246 [exp] 62 / 7e-10 AT5G62910 215 / 2e-67 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G026200 [exp] 919 / 0 AT3G45630 812 / 0.0 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.016G084700 [exp] 563 / 0 AT2G28540 446 / 1e-141 RNA binding (RRM/RBD/RNP motifs) family protein (.1), RNA binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G132300 [exp] 422 / 4e-132 AT3G45630 437 / 8e-138 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G074500 [exp] 61 / 2e-09 AT3G48070 204 / 3e-63 RING/U-box superfamily protein (.1.2) Potri.015G069400 [exp] 60 / 5e-09 AT3G48070 199 / 2e-61 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10036140 pacid=23141061 polypeptide=Lus10036140 locus=Lus10036140.g ID=Lus10036140.BGIv1.0 annot-version=v1.0 ATGAGCGACCAGGGAGACAAGACCTGCCCACTTTGCGCTGAGGAGATGGACCTGACTGATCAGCAATTGAAGCCTTGCAAATGTGGTTATGAGATATGTG TTTGGTGTTGGCATCATATAATGGACATGGCTGAGAAGGATGCCTCTGAGGGCCGGTGTCCTGCATGCCGCACTCCATATGACAAGGAGAAGATAGTAGG GACAGGACCAAATGAGAGATTGGTATCTGAAATCAATGAGCGAAAAAAGTCACAGAAGTCAAAGATGAAACCCTCAGAGGGGAGGAAACAGCTTAGCAGT GTGCGAGTTATCCAACGGAATCTTGTGTATATAGTTGGGCTACCGATGAACTTTGCAGATGAGGATCTTCTCCAGCGCAGAGAATATTTTGGCCAGTATG GTAAAGTCTTGAAGGTATCAATGTCGCGGACAGCAACTGGAGTTGTTCAACAATTTCCTAATAATACATGTAGTGTATATATTACTTATGGAAAGGAGGA TGAAGCAATTCGATGTATTCAATCCGTACATGGCTTTGTCTTGGATGGTAGATCGTTGAAGGCGTGTTTTGGAACCACAAAGTATTGTCATGCTTGGCTC AGAAATGTGCCCTGCACCAATTCCGATTGTCTATACTTGCATGAGGTTGGATCTCAAGAAGATAGTTTTACAAAAGATGAGATTGTATCAGCGTATACAA GGAATTGGGTACAACAGATTACTGGTGGCGCCAGTAGTTTGGCCCGCCGTTCTGGGAGTATGTTGCCGCCTCCAGCACTAGATTATTCTTATGATACTTC AGCCTCAGCCCTCGTAAAAAATTCAACAAATAGCACAGTTGGTACTAGTTGCAAAGGCTCACCTCCTAAGGGGAGCTGTAGTAGATCTGCTGCTCTTCCA GCTGCAGCCTCATGTTTCCAGCACTGTTCGGGTTCCAGCGGCTGTTACAGTACAGCCACAGTTCAGTCTTCTGCAGCAGTTGGTGATATAAAGTCAACTT CGAATGAAGATGGTCAACCAATAAACAGTGAAGGCAGACCTGATTCCTTAAGACCTATTAAACACCATGGCATAGGAGGTTCATGTGCAAAGAGTTCTCA GCTATTAAGTCATGAACAAGAGGGAGTTTCTATTGCTGATGAGAAACCTTCAAGTTTTTGTCCTGCAATGTCTTCGGAGAGGAGGACAAATAGTGGTCTC AGAAGTGAGGCATCTATCGCAATGACTAGAACTAGCAGAATGTTTCCAGAGGATAGTGCAGCAGTCAAATCCTCTAGTGGTCAGAAACATGTAGATCAGG CTGGGGAGTCTCTAGGTTCTGCAGCCTGTAAGCCTGCTGCCAATGGTGTATTTGTTTCAGGAGAAGTTAAAGATTCTGAAATGGATCTGCAGACTAAAGC TATTTCAAGCAGTGTTTCTGAGCTGGAAGAGGATTTGTTTCCATTTGATAATCAGAGACTGAATGATCCAGAGGTGGTCAGCCGTACATCGTATTTGCCA AGTACGATGACCTCTATACAGACAGCTGATGATTCTTGGTCAATTCCTTTGCAACATTGTGATGGATTAGATGTAAAGGGTGATCCTCTATTTCTAGATA GTAGAAATGGTGATCGTCTGGTGAGAAATATGTCTTGTGATGCTATCATGCGAACTGGATTCCCTGAGAAATTGACGAATAATAGCTCTACTGTGTTGGA TAGAACTGGACAACACCGATTTGTGCTTCCTGCCCAAAGTGAAGGAAAACATTCAGGAATACTACAATGTGAAAGTGATGGTAATGCTGCTCTAAATCCT GGAGAGAGTAGTATAATTTCAAATATACTATCTCTAGACCTGGATGGATGGGATGAGTCGTTAACTTCTCCTCAAAATTTGGCTAAACTTTTGGGTGATA CAGGAAAACAAACTAGTTCCCTGAATATGTCCAATTCCTGGAAAGTTCAAAGTAACAAGCAGTCTAAGTTCTCTTTTGCTAGGCAGCCGGAGTCTATGAA TCATGGAATTGATGCCGACAACTCCTTTATTGGGTTGGGACAGATGCCAAGGAATCATCCGTTTAATCATGAGCTCATGGAAAACAGAAATGCTTATATG GATACGCATGGACCGAGCAATGGTTTCTCGACAAGTATTGTGGATGAACCAAATAACTTTCTGGGTGGCATTCCAGCTTTCCCATTGAGTAATGCTTCAG GTCCCCGAGCTCAAATATCGGCACCCCCAGGGTTTACTGTGCCTAACAGAGCACCACCCCCAGGCTTCTCTTCTCACGAAAGAACGGACCATACCTTTGA TTCCATGTTAGGAAATCAGTTGCTGGAGACACCTTCGTTGTACAGAAGCTCATACCATGCTCCTCCAATGACTGGAAGCACGGGAAGCACAGTAGACATT GAATTAATTGATCCTGCAATTTTGGCCGTTGGTAAGGGGAGATTGCAAGGGGGGCTTAGTAGTGGTAACCACCCAGGTTTAGACTTGAGATCAAATTTCC AACAACAATTGGGAATGTTTGAGAATGAAGCCAGACTTCAACTACTCATGCAGAGATCTCAGCAACAGCAACAGCAGAACCTACGGTATGCTGCTGATCT TGGGGGTAGCTTTTCTAATGCCCCTGAATCTTACGGCATTTCTTCATGGAAGGCGGATCAGCTGCAAATGAACAGTAATCAGTCTGCCTTTGCAAAACTC TCCCACTCGCAGTCTAGGAACGGAGTTGTGTCAAATGGACATTGGAGTAATCATAATACTAGTTGGAATGAAGTTCAGGGTGGGAACAGTATGGGTATGG CAGAGCTACTAAGGAATGAGAGACTGGGGGGGTTGAACAAGTTTTACAATGCAGGTTATGATGATTCTAAATATCGGATGCCGAGTTCTGGTGACTTTTA CAACAGGACATTTGAGATGTGA
AA sequence Show only first row Show all	>Lus10036140 pacid=23141061 polypeptide=Lus10036140 locus=Lus10036140.g ID=Lus10036140.BGIv1.0 annot-version=v1.0 MSDQGDKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDASEGRCPACRTPYDKEKIVGTGPNERLVSEINERKKSQKSKMKPSEGRKQLSS VRVIQRNLVYIVGLPMNFADEDLLQRREYFGQYGKVLKVSMSRTATGVVQQFPNNTCSVYITYGKEDEAIRCIQSVHGFVLDGRSLKACFGTTKYCHAWL RNVPCTNSDCLYLHEVGSQEDSFTKDEIVSAYTRNWVQQITGGASSLARRSGSMLPPPALDYSYDTSASALVKNSTNSTVGTSCKGSPPKGSCSRSAALP AAASCFQHCSGSSGCYSTATVQSSAAVGDIKSTSNEDGQPINSEGRPDSLRPIKHHGIGGSCAKSSQLLSHEQEGVSIADEKPSSFCPAMSSERRTNSGL RSEASIAMTRTSRMFPEDSAAVKSSSGQKHVDQAGESLGSAACKPAANGVFVSGEVKDSEMDLQTKAISSSVSELEEDLFPFDNQRLNDPEVVSRTSYLP STMTSIQTADDSWSIPLQHCDGLDVKGDPLFLDSRNGDRLVRNMSCDAIMRTGFPEKLTNNSSTVLDRTGQHRFVLPAQSEGKHSGILQCESDGNAALNP GESSIISNILSLDLDGWDESLTSPQNLAKLLGDTGKQTSSLNMSNSWKVQSNKQSKFSFARQPESMNHGIDADNSFIGLGQMPRNHPFNHELMENRNAYM DTHGPSNGFSTSIVDEPNNFLGGIPAFPLSNASGPRAQISAPPGFTVPNRAPPPGFSSHERTDHTFDSMLGNQLLETPSLYRSSYHAPPMTGSTGSTVDI ELIDPAILAVGKGRLQGGLSSGNHPGLDLRSNFQQQLGMFENEARLQLLMQRSQQQQQQNLRYAADLGGSFSNAPESYGISSWKADQLQMNSNQSAFAKL SHSQSRNGVVSNGHWSNHNTSWNEVQGGNSMGMAELLRNERLGGLNKFYNAGYDDSKYRMPSSGDFYNRTFEM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60170			RNA binding (RRM/RBD/RNP motif...		Lus10036140 [exp]	0	1
AT4G33240		FAB1A	FORMS APLOID AND BINUCLEATE CE...		Lus10005176 [exp]	3.5	0.8459
AT1G72390			unknown protein		Lus10013169 [exp]	4.5	0.8554
AT3G18290		BTS, EMB2454	embryo defective 2454, BRUTUS,...		Lus10005111 [exp]	5.0	0.7990
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Lus10013804 [exp]	5.7	0.7722
AT1G61140		EDA16	embryo sac development arrest ...		Lus10011211 [exp]	5.7	0.8231
AT5G08470		EMB2817, PEX1	EMBRYO DEFECTIVE 2817, peroxis...		Lus10023123 [exp]	9.2	0.7978
AT3G48195			Phox (PX) domain-containing pr...		Lus10042108 [exp]	14.0	0.7934
AT2G22010		RKP	related to KPC1 (.1.2)		Lus10035857 [exp]	14.0	0.7728
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041668 [exp]	15.3	0.7085
AT3G23980		KOS1, BLI	KOLD SENSITIV 1, BLISTER (.1)		Lus10023694 [exp]	16.4	0.7845

Compare expression of checked genes

Lus10036140 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.