Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07850 234 / 5e-74 Protein of unknown function (DUF604) (.1) AT4G23490 226 / 7e-71 Protein of unknown function (DUF604) (.1) AT4G11350 225 / 7e-71 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) AT5G41460 205 / 5e-63 Protein of unknown function (DUF604) (.1) AT1G01570 171 / 2e-50 Protein of unknown function (DUF604) (.1) AT4G00300 127 / 2e-33 fringe-related protein (.1.2) AT2G37730 97 / 5e-23 Protein of unknown function (DUF604) (.1) AT3G11420 90 / 2e-20 Protein of unknown function (DUF604) (.1) AT1G33250 87 / 2e-19 Protein of unknown function (DUF604) (.1) AT5G12460 82 / 1e-17 Protein of unknown function (DUF604) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018123 [exp] 355 / 4e-121 AT5G41460 589 / 0.0 Protein of unknown function (DUF604) (.1) Lus10028769 [exp] 218 / 2e-71 AT4G23490 370 / 1e-127 Protein of unknown function (DUF604) (.1) Lus10024662 [exp] 218 / 4e-71 AT4G23490 441 / 5e-155 Protein of unknown function (DUF604) (.1) Lus10017514 [exp] 218 / 6e-68 AT5G41460 759 / 0.0 Protein of unknown function (DUF604) (.1) Lus10032293 [exp] 215 / 1e-66 AT4G23490 740 / 0.0 Protein of unknown function (DUF604) (.1) Lus10036382 [exp] 165 / 9e-48 AT4G11350 580 / 0.0 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) Lus10007923 [exp] 158 / 7e-46 AT4G11350 397 / 5e-135 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) Lus10024663 [exp] 107 / 6e-28 AT5G41460 280 / 2e-94 Protein of unknown function (DUF604) (.1) Lus10033262 [exp] 99 / 6e-24 AT1G33250 544 / 0.0 Protein of unknown function (DUF604) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G026300 [exp] 283 / 2e-93 AT1G07850 637 / 0.0 Protein of unknown function (DUF604) (.1) Potri.001G100700 [exp] 219 / 2e-68 AT4G23490 757 / 0.0 Protein of unknown function (DUF604) (.1) Potri.003G131400 [exp] 218 / 8e-68 AT5G41460 732 / 0.0 Protein of unknown function (DUF604) (.1) Potri.012G107800 [exp] 180 / 1e-53 AT4G23490 546 / 0.0 Protein of unknown function (DUF604) (.1) Potri.011G147300 [exp] 99 / 1e-23 AT1G33250 648 / 0.0 Protein of unknown function (DUF604) (.1) Potri.016G101200 [exp] 97 / 4e-23 AT2G37730 618 / 0.0 Protein of unknown function (DUF604) (.1) Potri.006G089150 [exp] 96 / 2e-22 AT2G37730 626 / 0.0 Protein of unknown function (DUF604) (.1) Potri.001G454600 [exp] 91 / 7e-21 AT1G33250 629 / 0.0 Protein of unknown function (DUF604) (.1) Potri.017G039600 [exp] 91 / 1e-20 AT1G05280 479 / 3e-167 Protein of unknown function (DUF604) (.1) Potri.017G039500 [exp] 89 / 3e-20 AT4G15240 491 / 9e-171 Protein of unknown function (DUF604) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF04646 [flax] [poplar] DUF604 Protein of unknown function, DUF604
Representative CDS sequence Show only first row Show all	>Lus10036142 pacid=23141151 polypeptide=Lus10036142 locus=Lus10036142.g ID=Lus10036142.BGIv1.0 annot-version=v1.0 ATGGACAGGCCTGTTGTTGTTAACTCCTCCTCCGAGGGGCTTCCTGAAATCAAGATTTCAGGGGACACATCCGAATTCAAGTACTCTAACAGACAAGGCC ACCGATCGGCTCTGAGGATCTCCAGGGTGGTTTCTGAGACGCTCAAGCTTGGATTGAAGGACGTCAGATGGTTCGTGATGGGAGACGACGACACTGTATT CGTACCAGAGAATGTTGCCCGGATACTCGACAAGGTTGATTCAGCTAGTGTGATTCAGCAATCCGTATGCTATGACAGGGACAGGTATTGGTCCATCTCG GTTTCCTGGGGGTATGCTGTTCAAGTGTGGAGAGGGGTGATATCTCCTAGGGAGCTTGAGGTTCCAACTAGAACATTCCAAAACTGGTACAGGAGGGCAG ACTACGCTGCTTATTCATTCAACACTAGGCCTGTCACTAAGCACCCTTGTCTCCAACCTTTTGTTTTCTACATGAGCACCACTAAACTCAATCGATCTAG AAACAAGACCCTCGGGGTCTACTACCGTCACAAAGCACCCTCCCCTTATTGCCGCTGGAAAATGGCTTCCCCTGAAAAGATTAACTCCATCGTTGTCATC AAGAGGCCTGACCATCAAAGATGGAAAAAGTCACCAAGGAGGGATTGTTGCAGAGTTTTGCCAACTAACAGAACGGAGAGTATGTACGTATGGGTGGGAA GTTGCCCTACAGGTGAGATGAGTGAGTTGGACAAGAAATGA
AA sequence Show only first row Show all	>Lus10036142 pacid=23141151 polypeptide=Lus10036142 locus=Lus10036142.g ID=Lus10036142.BGIv1.0 annot-version=v1.0 MDRPVVVNSSSEGLPEIKISGDTSEFKYSNRQGHRSALRISRVVSETLKLGLKDVRWFVMGDDDTVFVPENVARILDKVDSASVIQQSVCYDRDRYWSIS VSWGYAVQVWRGVISPRELEVPTRTFQNWYRRADYAAYSFNTRPVTKHPCLQPFVFYMSTTKLNRSRNKTLGVYYRHKAPSPYCRWKMASPEKINSIVVI KRPDHQRWKKSPRRDCCRVLPTNRTESMYVWVGSCPTGEMSELDKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07850			Protein of unknown function (D...		Lus10036142 [exp]	0	1
					Lus10010492 [exp]	4.4	0.8157
AT3G22540			Protein of unknown function (D...		Lus10010564 [exp]	8.1	0.7849
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10001347 [exp]	11.7	0.7818
AT1G75800			Pathogenesis-related thaumatin...		Lus10033136 [exp]	24.3	0.7185
AT4G35320			unknown protein		Lus10022985 [exp]	24.7	0.7190
AT5G40960			Protein of unknown function (D...		Lus10032031 [exp]	30.3	0.6837
					Lus10018648 [exp]	31.5	0.7495
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10011215 [exp]	31.6	0.7134
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10030029 [exp]	35.2	0.6788
AT4G13450			Adenine nucleotide alpha hydro...		Lus10032598 [exp]	36.0	0.7429

Compare expression of checked genes

Lus10036142 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.