Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45780 1026 / 0 RPT1, NPH1, JK224, PHOT1 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) AT5G58140 730 / 0 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) AT5G40030 203 / 2e-56 Protein kinase superfamily protein (.1) AT2G44830 205 / 3e-55 Protein kinase superfamily protein (.1) AT5G55910 199 / 3e-55 D6PK D6 protein kinase (.1) AT4G26610 198 / 7e-55 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT1G79250 198 / 2e-54 AGC1.7 AGC kinase 1.7 (.1.2) AT3G08720 195 / 5e-54 ATPK2, ATPK19, ATS6K2, S6K2 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) AT5G47750 196 / 2e-53 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT3G12690 196 / 2e-53 AGC1.5 AGC kinase 1.5 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018122 [exp] 1416 / 0 AT3G45780 1191 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Lus10026572 [exp] 985 / 0 AT5G58140 1290 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10001604 [exp] 914 / 0 AT5G58140 1218 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10001355 [exp] 862 / 0 AT5G58140 1141 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10013856 [exp] 298 / 1e-90 AT5G58140 368 / 8e-120 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10028208 [exp] 223 / 3e-62 AT2G44830 639 / 0.0 Protein kinase superfamily protein (.1) Lus10042911 [exp] 198 / 9e-55 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10013715 [exp] 196 / 2e-54 AT2G26700 472 / 2e-164 PINOID2, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10016629 [exp] 199 / 5e-54 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G342000 [exp] 1300 / 0 AT3G45780 1388 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Potri.004G209700 [exp] 1000 / 0 AT5G58140 1332 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.009G170640 [exp] 699 / 0 AT5G58140 825 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.009G170550 [exp] 230 / 3e-69 AT5G58140 400 / 1e-134 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.006G003800 [exp] 200 / 1e-54 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.016G004900 [exp] 200 / 1e-54 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.002G137700 [exp] 202 / 2e-54 AT2G44830 901 / 0.0 Protein kinase superfamily protein (.1) Potri.017G075400 [exp] 197 / 2e-54 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1) Potri.006G109600 [exp] 196 / 3e-54 AT3G08720 637 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.014G047500 [exp] 201 / 4e-54 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0183 [flax] [poplar] PAS_Fold PF08447 [flax] [poplar] PAS_3 PAS fold CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0183 [flax] [poplar] PAS_Fold PF00989 [flax] [poplar] PAS PAS fold
Representative CDS sequence Show only first row Show all	>Lus10036144 pacid=23141239 polypeptide=Lus10036144 locus=Lus10036144.g ID=Lus10036144.BGIv1.0 annot-version=v1.0 ATGGAGAAATCGGAAAGTGAAACGAGAAGAGGCACTCGGGGTTCACTGGAAGTCTTCAACCCGTCAAGCACCCGACCCACCAACCCAGCCTACCGCCCCT CCTCCACCGCCACCTGGCAAACATGGGCCGACCCATCAAAACCCGAATCTGGCCCGGAGATCACTACTTCATGGATGGCACTCAGGGAGCCGCCGGCGAA CAGTGGAGCCGGCACGGCGGCCCAAAGGGCTGCGGAATGGGGGCTAGTACTCAAGACGGACAACGAGACAGGTAAGCCCCAAGGAGTTTCCGTCAGGAAT TCAGGGGGCGAGGAAGGAATAAAGCAGGCCTCCGGTAATTCGGTGAGGAGCTCCGGCGAGTACTCCGATGACGCTGGAAACGAGAGCAGGGGGATTCCAC GGGTTTCGGAAGACATCAAGGCCGCACTATCTTCGTTCCAGCAGACGTTTGTGGTTTCCGACGCTACCAAACCCGATTACCCGATTCTTTACGCCAGCGA AGGGTTTTTCAAGATGACCGGTTACACCTCCAAAGAAGTCGTCGGGAGGAACTGCCGGTTCCTGCAAGGTGCGGACACTGACCCGGAAGATGTAGCGAAA ATAAGGGAGGCGTTGGAGTGTGGGAAAAGTTACTGTGCAAGGTTACTGAACTACAAGAAGGATGGGACTCCTTTCTGGAACCTTCTCACCATTACTCCCA TCAAAGATGACAACGGCAACGTCCTCAAATTCATTGGAATGCAGGTAGAAGTGAGCAAATTTACAGAGGGGTCCAAGGATAAGTCCCTACGTCCCAATGG GTTGCCAGAATCTTTGATTCGCTATGATGCACGACAAAAGGAGCTTGCTGCAAGTTCAGTTACTGAATTAGTTGAAGCAGTAAAGAGACCACCACGTCCA CGTAGCGAATCGAAGACGAAGCGTCCAGTTTTCAGAAAATCGGAAAGTGGGGGTGTTGTTAATGGTGACGCAGCAGAGAGGAAAGGAGTAGTAGCAGTTG GTGGAAGGAGAAAATCAGAGAGTGCAGCTTCTTCTGCTCGAAACTCAATGCATAGTATCAGTGAGATGCCATTGCCAGACAAGAAACAGAGAAAATCCTC CCGTCTTTCCTTCATGGGGTTCAGGAGGAAAAGCACTACTGCTGCTACTTCAGATGTTAGCTTTGATCATGAGGACTATGATGATAATGATGATGAGCTG AGTGATGTTGATGATGATGATGCAAGGCCTGATAGCCTTGACGACAAAGTAAGGAAGAAAGAAATGAGAAAGGGTATTGATCTTGCTACCACCCTTGAAC GTATTGAGAAAAACTTCGTCATTACTGATCCAAGGCTACCCGATAATCCCATTATCTTTGCCTCTGATAGTTTCTTAGAGTTGACTGAGTACAGCCGCGA AGAAATACTCGGAAGAAATTGTCGATTTTTGCAAGGACCGGAAACTGATCCCTCCACCGTCAAGAAAATAAGGGACGCAATTAATAACCAGACTGAAGTT ACAGTGCAGTTGATTAACTACACCAAAACTGGCAAGAAGTTCTGGAATCTGTTCCATTTGCAGCCTATGCGGGATCAAAAGGGAGAAGTACAATACTTCA TTGGGGTTCAACTGGATGGAAGTGAGCATGTTGAGCCACAGAATAACTCAATTGCCAAGGATGCTGCAAATGAAGGGGAAAAGCTGGTGAAAGAAACTGC AGAAAACGTTGGTGTTGCAGCCAGGGAGCTTCCAGATGCTAATTTGAAACCAGAAGACTTATGGGCAAATCATTCCAAGGTAGTGTTTCCAAAGCCTCAC AGGAAGGATACTCCTAACTGGATAGCACTGCAGAAGATCCAAGATAGCGGAGAAGAGATAGGGCTAAAGCATTTTAAGCCAGTTAAGCCTCTGGGATCTG GTGACACTGGGAGTGTCCATTTGGTAGAGCTGTGTGGAACTGGCTTGTACTTTGCCATGAAGGCTATGGACAAAAACGTTATGCTGCACCGGAATAAGGT TCATAGAGCTTGTGCAGAGAGAGAAATACTGGACTTGTTGGACCACCCTTTTCTTCCTGCCTTATACGCTTCCTTTCAGACGAAAACACATATTTGCTTG ATAACGGATTACTGCGCCGGGGGAGAGCTCTTTCTTCTGCTGGACAGACAACCATCCAAGGTGCTCAAGGAAGATGCTGTCAGGTTTTATGCTGCAGAGG TAATTGTTGCACTGGAGTATCTCCACTGTCAAGGAGTTATTTACAGGGACTTGAAGCCTGAGAACGTGTTGCTGCAAAGCAATGGCCATATTTCGTTGAC GGGCTTTGAGATTATAACTGCAGCAGGCCATACCAGTGCAGTAGATTGGTGGGCTCTCGGCATTCTTCTGTATGAAATGTTGTATGGATACACCCCTTTC AGAGGCAAGTCGAGACAAAAGACATTCGCCAATATCCTTCACAAAGACCTTAAATTCCCTTCAACTATCCCAGTAAACGTCCATGCAAAGCAGTTAATGT ATAGATTGTTGCATAGAGATCCAAAGAAGAGGTTAGGATCGCGGGAAGGAGTAAATGAAATCAAGAGGCATCCATTCTTCAAAGACATCAATTGGGCATT GGTTCGCTGTATGGATGCTCCTAAGCTTGAGGCTCCGCTATTGTCTGGAAGCGAATCAGAAAACGAAGCTGCTAAACTCATTGATCCTGAATTAGAAGAC CTCCAATCTAATGTTTTCTGA
AA sequence Show only first row Show all	>Lus10036144 pacid=23141239 polypeptide=Lus10036144 locus=Lus10036144.g ID=Lus10036144.BGIv1.0 annot-version=v1.0 MEKSESETRRGTRGSLEVFNPSSTRPTNPAYRPSSTATWQTWADPSKPESGPEITTSWMALREPPANSGAGTAAQRAAEWGLVLKTDNETGKPQGVSVRN SGGEEGIKQASGNSVRSSGEYSDDAGNESRGIPRVSEDIKAALSSFQQTFVVSDATKPDYPILYASEGFFKMTGYTSKEVVGRNCRFLQGADTDPEDVAK IREALECGKSYCARLLNYKKDGTPFWNLLTITPIKDDNGNVLKFIGMQVEVSKFTEGSKDKSLRPNGLPESLIRYDARQKELAASSVTELVEAVKRPPRP RSESKTKRPVFRKSESGGVVNGDAAERKGVVAVGGRRKSESAASSARNSMHSISEMPLPDKKQRKSSRLSFMGFRRKSTTAATSDVSFDHEDYDDNDDEL SDVDDDDARPDSLDDKVRKKEMRKGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPSTVKKIRDAINNQTEV TVQLINYTKTGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSEHVEPQNNSIAKDAANEGEKLVKETAENVGVAARELPDANLKPEDLWANHSKVVFPKPH RKDTPNWIALQKIQDSGEEIGLKHFKPVKPLGSGDTGSVHLVELCGTGLYFAMKAMDKNVMLHRNKVHRACAEREILDLLDHPFLPALYASFQTKTHICL ITDYCAGGELFLLLDRQPSKVLKEDAVRFYAAEVIVALEYLHCQGVIYRDLKPENVLLQSNGHISLTGFEIITAAGHTSAVDWWALGILLYEMLYGYTPF RGKSRQKTFANILHKDLKFPSTIPVNVHAKQLMYRLLHRDPKKRLGSREGVNEIKRHPFFKDINWALVRCMDAPKLEAPLLSGSESENEAAKLIDPELED LQSNVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45780		RPT1, NPH1, JK2...	ROOT PHOTOTROPISM 1, NONPHOTOT...		Lus10036144 [exp]	0	1
AT5G27780			SAUR-like auxin-responsive pro...		Lus10023969 [exp]	2.2	0.9435
AT3G45780		RPT1, NPH1, JK2...	ROOT PHOTOTROPISM 1, NONPHOTOT...		Lus10018122 [exp]	2.4	0.9296
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10035976 [exp]	4.0	0.9350
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10011290 [exp]	4.0	0.9263
AT3G61260			Remorin family protein (.1)		Lus10030379 [exp]	5.0	0.9344
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10040484 [exp]	6.3	0.9402
AT4G38840			SAUR-like auxin-responsive pro...		Lus10008991 [exp]	8.1	0.9400
AT1G21460		SWEET1, AtSWEET...	Nodulin MtN3 family protein (....		Lus10028634 [exp]	9.2	0.9159
AT3G27580		D6PKL3, ATPK7	D6 PROTEIN KINASE LIKE 3, Prot...		Lus10002518 [exp]	10.0	0.9041
AT1G08770		PRA1.E	prenylated RAB acceptor 1.E (....		Lus10018774 [exp]	10.2	0.9183

Compare expression of checked genes

Lus10036144 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.