Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45830 944 / 0 unknown protein AT1G02290 124 / 1e-29 unknown protein AT5G13950 65 / 3e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018121 [exp] 1991 / 0 AT3G45830 803 / 0.0 unknown protein Lus10028606 [exp] 142 / 3e-35 AT1G02290 206 / 7e-61 unknown protein Lus10018907 [exp] 140 / 9e-35 AT1G02290 210 / 3e-62 unknown protein Lus10031980 [exp] 59 / 4e-08 AT5G13950 438 / 2e-138 unknown protein Lus10035121 [exp] 51 / 9e-06 AT5G13950 292 / 1e-85 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G233800 [exp] 1286 / 0 AT3G45830 1075 / 0.0 unknown protein Potri.009G026100 [exp] 1214 / 0 AT3G45830 1059 / 0.0 unknown protein Potri.002G184000 [exp] 139 / 1e-33 AT1G02290 231 / 2e-69 unknown protein Potri.014G109600 [exp] 137 / 6e-33 AT1G02290 229 / 3e-68 unknown protein Potri.002G237800 [exp] 63 / 1e-09 AT5G13950 556 / 0.0 unknown protein Potri.014G144100 [exp] 63 / 2e-09 AT5G13950 406 / 4e-127 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036145 pacid=23141141 polypeptide=Lus10036145 locus=Lus10036145.g ID=Lus10036145.BGIv1.0 annot-version=v1.0 ATGGCGATTGAGAAGAACAACTTTAAGGTGTCTAGGTTTGATCCCGACTCTTCACCAAATAGCAGAGATACCGTGTCTAGTGATGATGATGAACATCAGC GCAGGGTTTCTGCTGCTGAATCTGACGATGAAGATGAAGAATTTGATGATGCAGATTCTGGGGCAGGATCTGATGATTTTGACTTGTTAGAGTTGGGCGA AACTGGTGCTGAGTTTTGCCAATTGGGTGACCTCACTTGCAGTGTTCCTTTTGAGTTGTATGATCTTCCTGGCTTACTAGATATACTGTCAGTGAATGTA TGGAATGATGTTCTGAATGAAGAGGAGAGATTTTGCCTTACAAAGTATCTGCCTGACATGGATGAGCTCACCTTTATGCAAACTCTTACAGAGCTCTTTG AAGGTGCAAATCTCCATTTTGGCAGCCCTGTGAAGAGGTTGTTTGAGATGTTGAAAGGAGGCTTATGTGAACCAAGGGTTGCTCTTTATAGGGAAGGTTT GACTATTTTCCAAAAGAGACAGCACTATCATCTACTTCGCAAGCATCAAAATAATGTGGTTATCAATATGTGTCAGACTAGGGATGCTTGGCTTAAATGT AGGGGTTATAGTATTGATGAGAAGCTTAGGATTTTAAACATTATCAAGAGTCAAAAGATGTTGATGTCTGAAAACGTGGAAGAAGATTTTGGAAGTGACT CCTCAGAGCAACATCAGTTGGCCGATGCTTTTTGGGGAAAACGAGTCAAGGACAGAAAGGATGTGCGCAATGCCTCAAACAGGCCTGCCTCAAATCCAGA AGTTCCGTCACTTATGCCTCCAAAGGAGCCGACCAAGTATGGTAAACAGAACGCGAAGGGCAAGCTTAAGTTAGCTGGGTCCAAAGCGCCATCCTTGAAC GGCATGAGAAGTCCTCCTCTCCCTCTTTTTGATGGTATGGAAGTGAATGCCAGAGCATATGGACATCCAGTGCCTCTTCCTCGTCAGAATAGGCTAGCTG GGTATGACACAGGGAATATACTTTGTCTACAGGATCGTAAGAGAACAGGTGATCATTATGATAGTGATGAGTATGAAGATAATGAAGAGGCCATTCATGT TGGTGCTAAACAGGAGCGTATTAAGGCACGTACCAGTGTGATAGACAAATCCAGGGGTTTGAAGTTTGGGAAGAATAAGCATCATTCAAGAACTAATGAA CTAGATGATGACAGTTACATTGGCTCGCCTTTCTCTTTTAGAAGTGATCTCAATGCTTATGGTAGGCACATAAATGCTTCTATGCAGCCGGAACATGAAC TATTCAGTAAACCGCCTAATACCTGGCATTCTAATCAGCTGGGCAAAAAGTTGAAGTATCCTGAAACGGTCCAGCAGTTTCCTTTTGATGATCAGATGAA ACCCCAGAGATTCAGTGCTGGACTGATTCCTCTGGAGGGTAATCGAACTGACTTGTTGAATGATGATGAACCCATTTGGCATAAAAATAAATACGGAGAG GCTTTTTCCATGGGCACTTCTAAATACGAAGACTTCAATGGCAGAAGTAAGAATTGGAGTCCTGAATTTGATGTCAAAGGTTATGGAGCTTCTTCTCCTC AGGTGAGCGATAGAATGATTCTTTCTGAATTTAGAGATACTCGATTGCATGAGAAGGGCAGGAGAAATTTTGTACAGAATGGAGGACCTGTTAAGGGAGC ATCGAGAGGGAAGGGGATGTATATGAGACGAGAAGAAACAGAGTCATATTCATCTGAACCACTTGATGAAGGTGATGATGGGGAAGAGGGTAACACTCCT TTGATTTATACGAAGCCTGTATACTCTAGGCGGACTAAAGAAGCTTCTAAATCCTCATGGTCAAAGTCCAGGTCGGATTTTACGAAGGCCGGCATTGGTA GCCCAGATATGCAGGACGGAGAACAAGGCTTTGAAGATGTGCTTAATGATCGTGGTCATGTTTCAGGACATCTGTCAAGAGCTAAACAGAAAATGAAGAT CCAACACACAAGTCCTTTGAAGAGTTCTAGTGCTATACTGGATCAAAGCCTTCCCTTTGTTTCTGGTAATCTGAAAGATGACAGCAACAGGAAGGGAGTT CATAAGCTGGGAAAGAATGGCCGATCTCGTGCAGACTCAATTAATAGATTGCAAATCCTCTCCTCGAAGTCCTATCCTTCTGGCAGGAAGCAGATAGATT TAGATAGCCGTGATAACAATGTTGAGGGGGGTGATGATATCTATGAAGCTCGTTATTTGGCAGATGAAAAGGCAGTAGGTAGATTGGCTAAGAGAGGAGA AAAAATTGAGTCCCGTGTCCACAATAATCATGATAACTCCGAGATGTCATTGCTGGGGTGCAACTCAGTAACGAAGAAACGGAAGGCAAAATTAGAACCA ATGGACCTGGATGACAGAGAAGATGTAAATTTGCAGTCTACAGTTGTGATGCAAATTGGCGAGTCTGTTCCATTGAAGAAAAAGGGGAAAAAGAAAGGAC GGAGTGTCAATGTTGCAGCTGAGCTGGAAAATCCCGAGCTACCTCCTGAAATTAAATTACCGGATTTGGAGGTGGAAATAAAACCACAGAAAAAGCCCTA TATACCAATCACACCTACAGTTCATACTGGCTTCTCGTTTTCAATTGTACACCTTCTTTCTGCAGTTCGCTTGGCAATGGTCACTCGTCTTCCGGAGGAT GCTTTGGAACCTATTGTGGTGAACAGACAGCAGGAAGACGATACAAATGGGTTTGTCTCTCCCGACGCCAATACAATAGAACATGCTCCTAGCTCAAATG TTCCCTCTTTAACCTCTATGGAGATTGTGAATCGTGTCAAATCAAATCCAGGGGATCCTTGCATTCTTGAGACTCAAGAGCCACTTCAAGATTTGGTCAA AGGGGTTCTAAAGATATTTTCTTCGAAACCAGCAACTTTAGGAGCAAAGGATTGGAAGGTGCTTGTGGAGTACGAAAAGTCTACAAAACGCTGGTCCTGG AAAGGTCCAGTTTCTCAAACTTCAACAGATTCTGATGGCGTTGAGCAGGTGACATCTCCAGAATATTGGGGTCTGCCTCAGAAAATGCTAGTCAAGTTGG TGGATTGTTTTGCTAATTGGCTAAAAAGTCACCAGGAGACCCTTCAACAAATCGGAAGTCTTCCTGAGCCACCTTTATCATTGATGCAGTGTAACTTGGA TGAGAAGGAAAGGTTCAGGGACTTGAGAGCTCAGAAGAGTCTTAGCACCTTTAGTCCAAACACAGAGGAAGTAAGGTCTTACTTCAGGAAAGAAGAGTTC TTAAGGTATTCAATTCCTGACAGGGCATTCTCATACACGGCTGCAGATGGTAAGAAGTCTTTTGTGGCCCCATTGAGAAGGTGTGGTGGTAAGCCAACTT CAAAACCAAGGGACCATTTCATGCTAAAGCGAGATCGACCCCCACATGTGACGATTCTATGTCTTGTGAGAGATGCAGCTGCCAGATTGCCTGGTAGTAT CGGTACTAGAGCGGATGTGTGCACTTTGATTAGAGATTCTCAATATATTGTTGAAGAAGTGTCTGATGTACAAGTAAACGGAGTTGTGAGTGGTGCGCTG GATAGGTTGCATTATGAACGTGATCCTTGTGTTCTGTATGACGGTGAAAGGAAGTTGTGGGTGTACCTGCACAGGGAGAGAGAGGAAGAAGATTTTGAGG ATGACGGTACATCATCCACCAAAAAGTGGAAGAGGCAAAAGAAGGATTCTACTGATCAACCTGAACCTGAGCAAGGAGGAGTGACTATGACTTTAAATGA CCAATCTGGGTTTGAGTTGGGTTGTTCAGTCGGAGATGTTCCTGGTGTTGATAATTATACAAGTGCGGGGGATGCGATGCAACAGAATATGGTGGTGGAG GAAGCGATGGATACTAGTCATGTTTCTGGGCTACAAGACCATCCGATGGGCGGCTGGGATGGCCTTAGCCTACAAGATGAAAAGCTACTATGTCAAGAAA ACTCGACATTTCCTGGTGGGCTATTGGGTTCAAGTTTGTGA
AA sequence Show only first row Show all	>Lus10036145 pacid=23141141 polypeptide=Lus10036145 locus=Lus10036145.g ID=Lus10036145.BGIv1.0 annot-version=v1.0 MAIEKNNFKVSRFDPDSSPNSRDTVSSDDDEHQRRVSAAESDDEDEEFDDADSGAGSDDFDLLELGETGAEFCQLGDLTCSVPFELYDLPGLLDILSVNV WNDVLNEEERFCLTKYLPDMDELTFMQTLTELFEGANLHFGSPVKRLFEMLKGGLCEPRVALYREGLTIFQKRQHYHLLRKHQNNVVINMCQTRDAWLKC RGYSIDEKLRILNIIKSQKMLMSENVEEDFGSDSSEQHQLADAFWGKRVKDRKDVRNASNRPASNPEVPSLMPPKEPTKYGKQNAKGKLKLAGSKAPSLN GMRSPPLPLFDGMEVNARAYGHPVPLPRQNRLAGYDTGNILCLQDRKRTGDHYDSDEYEDNEEAIHVGAKQERIKARTSVIDKSRGLKFGKNKHHSRTNE LDDDSYIGSPFSFRSDLNAYGRHINASMQPEHELFSKPPNTWHSNQLGKKLKYPETVQQFPFDDQMKPQRFSAGLIPLEGNRTDLLNDDEPIWHKNKYGE AFSMGTSKYEDFNGRSKNWSPEFDVKGYGASSPQVSDRMILSEFRDTRLHEKGRRNFVQNGGPVKGASRGKGMYMRREETESYSSEPLDEGDDGEEGNTP LIYTKPVYSRRTKEASKSSWSKSRSDFTKAGIGSPDMQDGEQGFEDVLNDRGHVSGHLSRAKQKMKIQHTSPLKSSSAILDQSLPFVSGNLKDDSNRKGV HKLGKNGRSRADSINRLQILSSKSYPSGRKQIDLDSRDNNVEGGDDIYEARYLADEKAVGRLAKRGEKIESRVHNNHDNSEMSLLGCNSVTKKRKAKLEP MDLDDREDVNLQSTVVMQIGESVPLKKKGKKKGRSVNVAAELENPELPPEIKLPDLEVEIKPQKKPYIPITPTVHTGFSFSIVHLLSAVRLAMVTRLPED ALEPIVVNRQQEDDTNGFVSPDANTIEHAPSSNVPSLTSMEIVNRVKSNPGDPCILETQEPLQDLVKGVLKIFSSKPATLGAKDWKVLVEYEKSTKRWSW KGPVSQTSTDSDGVEQVTSPEYWGLPQKMLVKLVDCFANWLKSHQETLQQIGSLPEPPLSLMQCNLDEKERFRDLRAQKSLSTFSPNTEEVRSYFRKEEF LRYSIPDRAFSYTAADGKKSFVAPLRRCGGKPTSKPRDHFMLKRDRPPHVTILCLVRDAAARLPGSIGTRADVCTLIRDSQYIVEEVSDVQVNGVVSGAL DRLHYERDPCVLYDGERKLWVYLHREREEEDFEDDGTSSTKKWKRQKKDSTDQPEPEQGGVTMTLNDQSGFELGCSVGDVPGVDNYTSAGDAMQQNMVVE EAMDTSHVSGLQDHPMGGWDGLSLQDEKLLCQENSTFPGGLLGSSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45830			unknown protein		Lus10036145 [exp]	0	1
AT3G22380		TIC	time for coffee (.1.2)		Lus10010535 [exp]	7.5	0.8789
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Lus10027841 [exp]	10.5	0.9024
AT2G18790		OOP1, HY3, PHYB	OUT OF PHASE 1, phytochrome B ...		Lus10037771 [exp]	12.9	0.8206
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Lus10036371 [exp]	17.0	0.8750
AT3G24870			Helicase/SANT-associated, DNA ...		Lus10022788 [exp]	17.8	0.8928
AT3G57300		ATINO80	INO80 ortholog (.1.2)		Lus10031050 [exp]	17.9	0.8831
AT5G13950			unknown protein		Lus10035121 [exp]	21.7	0.7955
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Lus10038363 [exp]	22.4	0.8849
AT1G13940			Plant protein of unknown funct...		Lus10026640 [exp]	23.4	0.7857
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Lus10014778 [exp]	24.7	0.8875

Compare expression of checked genes

Lus10036145 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.