Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45850 1483 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G28620 1308 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G37420 835 / 0 ATP binding microtubule motor family protein (.1) AT2G36200 774 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G44050 253 / 6e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G47820 244 / 6e-67 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G23670 243 / 8e-67 PAKRP1L ,KINESIN-12B phragmoplast-associated kinesin-related protein, putative (.1.2) AT5G60930 245 / 2e-66 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G19050 242 / 4e-65 POK2 phragmoplast orienting kinesin 2 (.1) AT3G17360 241 / 4e-65 POK1 phragmoplast orienting kinesin 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018120 [exp] 1960 / 0 AT3G45850 1583 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10009073 [exp] 969 / 0 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10025275 [exp] 937 / 0 AT3G45850 981 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10024429 [exp] 855 / 0 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1) Lus10025304 [exp] 841 / 0 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1) Lus10021340 [exp] 821 / 0 AT2G36200 1499 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10014216 [exp] 789 / 0 AT2G36200 1464 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10017016 [exp] 748 / 0 AT2G36200 1381 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10012048 [exp] 251 / 8e-68 AT3G19050 1758 / 0.0 phragmoplast orienting kinesin 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G233700 [exp] 1581 / 0 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G026000 [exp] 1577 / 0 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G082400 [exp] 1072 / 0 AT3G45850 1107 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G082900 [exp] 875 / 0 AT2G37420 1219 / 0.0 ATP binding microtubule motor family protein (.1) Potri.006G210700 [exp] 812 / 0 AT2G36200 1442 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G077800 [exp] 805 / 0 AT2G36200 1476 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G193700 [exp] 251 / 2e-68 AT3G44050 1236 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G150800 [exp] 251 / 2e-68 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G145800 [exp] 251 / 7e-68 AT3G19050 1765 / 0.0 phragmoplast orienting kinesin 2 (.1) Potri.009G156000 [exp] 246 / 8e-67 AT3G44050 1231 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10036146 pacid=23141093 polypeptide=Lus10036146 locus=Lus10036146.g ID=Lus10036146.BGIv1.0 annot-version=v1.0 ATGGAGTCTTCAGGGTCACAGCAGAGAAGAGCAGGTGGTTTGGTTTCGCTATCCCCCTCACAGACTCCGCGATCCACTGATAAAGCTGCCAGAGATCTAC GATCAGCAGATTCAGGTTTCGTTGCCAGACACGACAAAGATAAAGGTGTCAATGTGCAGGTCATTGTGCGTTGCAGGCCATTGAGCGAGGAAGAAATAAA GGTTCGTATATCAGCGGTGATTTCTTGCAATGAAGGTAGAAGGGAGGTCACAGCTGTTCAGAGTATTGCTAACAAGCAAATTGATAGAACCTTCCAATTT GACAAGGTTTTTGGTCCGAGTGCCAAACAGAAAGAATTGTATGATCTCGCGGTGTCGCCAATCGTTTATGAAGTTCTTGAGGGTTATAATTGCACAATCT TTGCCTACGGTCAGACAGGCACGGGAAAGACCTACACAATGGAAGGCGGAGCTAGGAAAAAGAATGGAGAATTTCCGGCTGATGCTGGTGTAATTCCAAG AGCCGTTGAACAAATTTTTAACATCTTAGAAGCTCAGCATGCTGAGTACAATTTGAAAGTCACGTTTTTGGAGCTTTACAATGAGGAGATAACAGACCTT TTGGCCCCCGATGAAACTCCTAAGTTCGTTGATGACAAATCTAAGAAACCCATAGCCCTAATGGAAGACGGAAAAGGCGGTGTTTTCGTGAGGGGTCTGG AAGAAGAAATAGTATCTACTGCCAATGAGATCTACAAAATATTGGAGAAGGGTTCTGCAAAGCGGCGCACAGCAGAGACTCTTCTTAATAGGCAAAGCAG TCGTTCTCATTCAATATTCTCCATCACCATTCATATTAAGGAATGTACTCCAGAAGGGGAAGAGGTGATCAGATGCGGAAAGCTGAATCTTGTTGATCTA GCCGGGTCTGAGAACATTACCCGTTCTGGTGCGCGAGAGGGCAGAGCAAGGGAAGCGGGAGAGATTAATAAAAGCCTGCTTACACTAGGTCGTGTAATAA ATACTCTTGTTGAGCATTCTGGACATATACCTTATAGGGACAGCAAGTTAACAAGACTACTGAGGGACTCATTGGGAGGTAAAACAAAGACTTGTATTAT TGCCAACATATCACCTTCTATTCAGTGTTTGGAGGAAACACTCAGTACATTAGATTATGCATATCGTGCTAAGAATATAAAAAACCGGCCAGAGATCAAT CAGAAGATGATGAAATCTGCCATGATTAAGGATCTGTACTCTGAAATTGATCGCTTGAAGCAAGAGGTATATGCCGCAAGAGAGAAAAATGGTATCTACA TCCCACGAGATCGCTACCTTCAAGAAGAAGCTGAAAAGAAGGCAATGGCAGAAAAAATAGAGCTCATAGAAATAAATTCAGAGTCTAAAGACAAGCAATT GATGGAGATTCAGCAACTCTACAATGCACAGCTTCATATGACAGCTGACCTAACGGAGAAGCTTGATAAAACAAAGAGAAAGCTTGAAGAAACTGAAGGT TCATTGTCAGATCTCCAAGCGAAGCACTTGCAGGCCAATGCAACAATTAAGGAGAAAGAGTTCTTGATATCTAATCTTCTAAAAGCTGAGAAAGCATTGG TGGAGCGTGCAGTTGAGCTGAGGGCAGAACTTGAAACTGCTGCATCTGATGTATCCAGTTTATTTTCTAAAATTGAGAGGAAAGATAAAATTGAAGATGG AAATAGAGTACTTGTTCGGAAATTCCAGTCCCAGCTGACCCAGCAGCTAGAAATATTGCATAAGACTGTGGCATCCTCTGTCACCCAGCAAGAGGCGAAA TTGAATGATATGGAAGAAGATATGCATTCTTTCGTATCAACTAAGGATGAGGCTACTGAGGAACTTCGAGGAAAGGTTGGGAAGTTCAGACTGATGTATG GATCAAGGATCAAAGCTTTGAATGATATGGCTAAACAACTTGAAGAAAATTCTCAATCAACCTGTTCCAGTTTAAACTCTCAAGTTTCAAAGCATTCGCA CGCCCTTGAGGATCTTTTGCGGGGAATATCTTCAGAAGCTGATGCATTACTTATCAATCTCCAAAGTAGTCTACACAAACAAGAGGAAAAGTTAACAGCT TATGCACAACAGCAGCGCGAGGCACATAGCAGAGCAGTGGAAACTGCACGATCAGTGTCCACAATCACAATAAATTTTTTCAAGACTCTTGATGTTCATG CTTCTAGCCTTAACCACATTGTTCAAGAAGCACAATCCGTAAATGATCAGAAGTTGTCTGATCTAGAAAGGAAATTTGAGGAGTGTGCTGCTTTCGAGGA AAATCAATTGTTAGAGAAAGTGGCGGAACTTCTGACGACTTCAAATCAAAGAAAGAAAAAGTTGGTTGAAATGGCTGTTGATGATCTGCGGGAGAGTGCT AGCAGTAGAACCAAAAAACTGCAGCAAGAAATGTCCACGATGGAAGATTCAACATCAACAATTAAAGAACAATGGATAGTCCATATGGACAAAACAGAAT TGAACTACCATGAGGACACATGTGTTGTAGAGAGTGGAAAGAGAGACTTGGAATCAGTCCTTCACAATTGTTTGGATAATGCTCAAATGGGTGCACAACA ATGGAAGAATGCTCGAGAATCGTTACTTGGCCTAGAAAAGGCCAACGTTGCATCAGTAGATTCCATTATCAGAGATGGAATGGAAGCGAATCAAGCCGTA CAGATGCAGTTTTCGTCTGCAGTATCAGCTGCAAATAAAGATGCAGATGCGGCCAATACTGATCTTCTCTCCTCCATTGACAATTCGTTAAGACTCGACC GTGAAGCATGCGGGAACATGGATTCCATGATAGGGCCATGTTGCGGGGATTTGAGGGAGTTGAAGGGAGGTCATTACCACAAAGTCGTAGAGATCACTGA CAATTCTGGAAAATGCCTTGTCAAACAATATATGGTGGATGAACCATCTTGTTCGACACCAAGGAAGAGAGGAATCAATCTGCCGAGTATTGGGTCGATT GAGGAGCTGCGAACTCCTGCCTTTGAGGAGTTGTTGAGATGTTTCAGATCAACGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTATCCAACGGTG ACATAAAACAAAATGGAGTGATGGTTGGAGGGGCTGCTGCGCGCGTGTCGGGTAATAACAATAATGGCACCCCTCAATCTCAGAGAGACGCCAGAGTTCC TCTCACTGCTATAAATTGA
AA sequence Show only first row Show all	>Lus10036146 pacid=23141093 polypeptide=Lus10036146 locus=Lus10036146.g ID=Lus10036146.BGIv1.0 annot-version=v1.0 MESSGSQQRRAGGLVSLSPSQTPRSTDKAARDLRSADSGFVARHDKDKGVNVQVIVRCRPLSEEEIKVRISAVISCNEGRREVTAVQSIANKQIDRTFQF DKVFGPSAKQKELYDLAVSPIVYEVLEGYNCTIFAYGQTGTGKTYTMEGGARKKNGEFPADAGVIPRAVEQIFNILEAQHAEYNLKVTFLELYNEEITDL LAPDETPKFVDDKSKKPIALMEDGKGGVFVRGLEEEIVSTANEIYKILEKGSAKRRTAETLLNRQSSRSHSIFSITIHIKECTPEGEEVIRCGKLNLVDL AGSENITRSGAREGRAREAGEINKSLLTLGRVINTLVEHSGHIPYRDSKLTRLLRDSLGGKTKTCIIANISPSIQCLEETLSTLDYAYRAKNIKNRPEIN QKMMKSAMIKDLYSEIDRLKQEVYAAREKNGIYIPRDRYLQEEAEKKAMAEKIELIEINSESKDKQLMEIQQLYNAQLHMTADLTEKLDKTKRKLEETEG SLSDLQAKHLQANATIKEKEFLISNLLKAEKALVERAVELRAELETAASDVSSLFSKIERKDKIEDGNRVLVRKFQSQLTQQLEILHKTVASSVTQQEAK LNDMEEDMHSFVSTKDEATEELRGKVGKFRLMYGSRIKALNDMAKQLEENSQSTCSSLNSQVSKHSHALEDLLRGISSEADALLINLQSSLHKQEEKLTA YAQQQREAHSRAVETARSVSTITINFFKTLDVHASSLNHIVQEAQSVNDQKLSDLERKFEECAAFEENQLLEKVAELLTTSNQRKKKLVEMAVDDLRESA SSRTKKLQQEMSTMEDSTSTIKEQWIVHMDKTELNYHEDTCVVESGKRDLESVLHNCLDNAQMGAQQWKNARESLLGLEKANVASVDSIIRDGMEANQAV QMQFSSAVSAANKDADAANTDLLSSIDNSLRLDREACGNMDSMIGPCCGDLRELKGGHYHKVVEITDNSGKCLVKQYMVDEPSCSTPRKRGINLPSIGSI EELRTPAFEELLRCFRSTQQQQQQQQQQQLSNGDIKQNGVMVGGAAARVSGNNNNGTPQSQRDARVPLTAIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45850			P-loop containing nucleoside t...		Lus10036146 [exp]	0	1
AT5G19670			Exostosin family protein (.1)		Lus10012973 [exp]	1.0	0.8894
AT4G01210			glycosyl transferase family 1 ...		Lus10008732 [exp]	2.6	0.8721
AT4G24550			Clathrin adaptor complexes med...		Lus10003537 [exp]	3.5	0.8784
AT4G02030			Vps51/Vps67 family (components...		Lus10041387 [exp]	3.9	0.8817
AT2G41830			Uncharacterized protein (.1)		Lus10026298 [exp]	3.9	0.8808
AT1G20410			Pseudouridine synthase family ...		Lus10021236 [exp]	4.0	0.8600
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10000949 [exp]	4.7	0.8540
AT2G46180		GC4	golgin candidate 4 (.1)		Lus10036406 [exp]	5.5	0.8844
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10036500 [exp]	6.0	0.8308
AT3G12770		MEF22	mitochondrial editing factor ...		Lus10000706 [exp]	6.6	0.8197

Compare expression of checked genes

Lus10036146 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.