Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30760 614 / 0 FAD-binding Berberine family protein (.1) AT2G34790 596 / 0 MEE23, EDA28 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) AT5G44400 570 / 0 FAD-binding Berberine family protein (.1) AT5G44390 533 / 0 FAD-binding Berberine family protein (.1) AT5G44380 525 / 0 FAD-binding Berberine family protein (.1) AT5G44360 473 / 2e-162 FAD-binding Berberine family protein (.1) AT1G30700 463 / 6e-159 FAD-binding Berberine family protein (.1) AT1G26380 451 / 8e-154 FAD-binding Berberine family protein (.1) AT1G26420 448 / 5e-153 FAD-binding Berberine family protein (.1) AT4G20860 445 / 9e-152 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018119 [exp] 964 / 0 AT2G34790 641 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10023361 [exp] 650 / 0 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10038439 [exp] 482 / 2e-166 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10023363 [exp] 459 / 1e-157 AT2G34790 504 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10032943 [exp] 459 / 5e-157 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10039682 [exp] 454 / 5e-155 AT5G44440 481 / 9e-166 FAD-binding Berberine family protein (.1) Lus10012641 [exp] 451 / 4e-154 AT5G44440 518 / 2e-180 FAD-binding Berberine family protein (.1) Lus10023375 [exp] 443 / 6e-151 AT1G30700 606 / 0.0 FAD-binding Berberine family protein (.1) Lus10038446 [exp] 441 / 2e-150 AT4G20860 520 / 0.0 FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G462800 [exp] 631 / 0 AT1G30760 659 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158700 [exp] 624 / 0 AT1G30760 664 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G463400 [exp] 605 / 0 AT1G30760 661 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G159200 [exp] 601 / 0 AT5G44400 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G160400 [exp] 600 / 0 AT5G44400 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G161500 [exp] 600 / 0 AT1G30760 632 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G159100 [exp] 600 / 0 AT5G44400 614 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G159600 [exp] 598 / 0 AT1G30760 642 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G160900 [exp] 598 / 0 AT1G30760 646 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G159400 [exp] 594 / 0 AT1G30760 607 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF08031 [flax] [poplar] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Lus10036147 pacid=23140970 polypeptide=Lus10036147 locus=Lus10036147.g ID=Lus10036147.BGIv1.0 annot-version=v1.0 ATGGCATCTCCACAGTTAGTGATTGTTGTTGTTGTTGTTGTTGTTGCTCTGCTCTTTCCATCCCTCATCTATGGCCTTCCACTTCCATCACTAGCCGTCA GTAGCTTCCAAAAATGCCTGACAGAGAAATCCACATCTCCGATCCCATTCCACAAAACCTTGCTCGCCAATAACTCCTCCCCTGTTTTCAACTCTGCACT TTCCAGCACAGCTCAAAACCTCCGCTACTTGCTCCCTTCCGTACCCAAACCTCTACTCATCTTCCGCCCACACCGTATTGCCCATATCCAAGCCGCCGTA ATCTGCGCTAGCAAACTCCGATTACCATTCAGGGTCCGCAGCGGCGGCCACGATTACGAGGGCCTCTCTTACGCCACTCAAATCGACTCCCCTTTCCTCA TCCTTGACCTCTCCAGATTCCGCAAGGTCAGCGTAGATATTGCTTCCAACACTTCCTGGGTCCAAGCCGGCGCAACCGTCGGCGAGGTTTATTACAAAAT TTCCCAAAAAAGCCCCGTCCATGGCTTCCCCGCCGGGCTCTGCACCAGCTTGGGAATCGGCGGCCATATCACCGGCGGTGCTTACGGCTCCATGATGAGA AAGTACGGTCTTGGTATTGATAACGTCGTCGACGCTCGCATAATTGGTCCTAACGGTAAGCTGTTGAACCGTCGGGAGATGGGAGAGGACGTTTTCTGGG CGATCAGAGGAGGAGCTGGAGGGAGCTTCGGAGTAATTGTTGCCTGGAAATTGAAATTAGTCCCCGTACCCAAAACGGTGACGGTTTTCAACGTCCCATT GACATTACAACAGGGAGCTACAAAAGTATTGTTCAAATGGCAGCAAGTTGCTGCTACTCTAGACGATGATTTATTCATTAGAGTTCTGATTGTGGCAACT CCAGTAGCGAATTCCACCACAAGAAGAAGAACAGTGACAACGATATACAACGCTCTTTTTCTAGGGGATCCCGATCGGCTCCTGAAAATAATGGGTGCGA AATTTCCCGAGCTGGGTCTGGCGAAGAAGGATTGCTTGGAGATGAGCTGGATTAAATCAATTCTTTTTATTGCCGGAATACCAGGCAACGTGGGCCCTGA GTTTCTTCTCCAAGGGAAGTCGTTTCTCAACCCAGCGTTTTTCAAGGCGAAGTCGGACTTTGTGAGGGAGCCAGTTCCGGAGAAGGCGCTGGCAGGGATC TGGAGGAGGTTCTTGAAAGAGAACAGTCCGTTGTCAATATGGAATCCGTTCGGAGGTGAAATGGCGAGGATTGGGAAATCGGCGACGCCGTTTCCTCACC GGAAGGGTACGTTGTTTATGATTCAATACTTGACAAACTGGTCGGAGGGAAAGGGTGGGGAAAACATTGGTTGGATTAGGGAGCTGTACAACTACATGGC TCCCTATGTTAGCAAGTCACCCAGAAGTGCGTATGTGAACTACAGGGATCTTGATTTGGGGATGAACAAGAAGAAAGGTAATACGAGCTCCATGGGCGAG GCAAGCGTTTGGGGACGCAAGTATTTCATGGAGAATTTCAACCGACTGGTGCGGATCAAGACAAAGTTTGATCCTCATAATTTGTTCAGGCATGAACAGA GCATTCCTTCCCTTGTTGTTTGA
AA sequence Show only first row Show all	>Lus10036147 pacid=23140970 polypeptide=Lus10036147 locus=Lus10036147.g ID=Lus10036147.BGIv1.0 annot-version=v1.0 MASPQLVIVVVVVVVALLFPSLIYGLPLPSLAVSSFQKCLTEKSTSPIPFHKTLLANNSSPVFNSALSSTAQNLRYLLPSVPKPLLIFRPHRIAHIQAAV ICASKLRLPFRVRSGGHDYEGLSYATQIDSPFLILDLSRFRKVSVDIASNTSWVQAGATVGEVYYKISQKSPVHGFPAGLCTSLGIGGHITGGAYGSMMR KYGLGIDNVVDARIIGPNGKLLNRREMGEDVFWAIRGGAGGSFGVIVAWKLKLVPVPKTVTVFNVPLTLQQGATKVLFKWQQVAATLDDDLFIRVLIVAT PVANSTTRRRTVTTIYNALFLGDPDRLLKIMGAKFPELGLAKKDCLEMSWIKSILFIAGIPGNVGPEFLLQGKSFLNPAFFKAKSDFVREPVPEKALAGI WRRFLKENSPLSIWNPFGGEMARIGKSATPFPHRKGTLFMIQYLTNWSEGKGGENIGWIRELYNYMAPYVSKSPRSAYVNYRDLDLGMNKKKGNTSSMGE ASVWGRKYFMENFNRLVRIKTKFDPHNLFRHEQSIPSLVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10036147 [exp]	0	1
AT4G00080		UNE11	unfertilized embryo sac 11, Pl...		Lus10001988 [exp]	11.4	0.8814
AT3G21710			unknown protein		Lus10027176 [exp]	16.9	0.8789
AT5G15490		UGD3	UDP-glucose dehydrogenase 3, U...		Lus10034703 [exp]	19.0	0.8781
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10034643 [exp]	25.2	0.8658
AT5G54370			Late embryogenesis abundant (L...		Lus10026972 [exp]	33.9	0.8676
AT1G16780		AtVHP2;2, AVPL1	Inorganic H pyrophosphatase fa...		Lus10034800 [exp]	34.6	0.8492
					Lus10025086 [exp]	38.4	0.7974
AT4G02600		MLO1, ATMLO1	MILDEW RESISTANCE LOCUS O 1, S...		Lus10008340 [exp]	39.5	0.8484
					Lus10023996 [exp]	42.8	0.8526
AT3G50940			P-loop containing nucleoside t...		Lus10024275 [exp]	50.5	0.8310

Compare expression of checked genes

Lus10036147 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.