Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30280 161 / 1e-44 Chaperone DnaJ-domain superfamily protein (.1) AT1G75100 80 / 7e-16 JAC1 J-domain protein required for chloroplast accumulation response 1 (.1) AT1G75310 80 / 1e-15 AUL1 auxilin-like 1, auxin-like 1 protein (.1) AT4G36520 79 / 2e-15 Chaperone DnaJ-domain superfamily protein (.1) AT4G12780 79 / 3e-15 Chaperone DnaJ-domain superfamily protein (.1.2) AT4G12770 78 / 4e-15 Chaperone DnaJ-domain superfamily protein (.1.2) AT1G21660 77 / 4e-15 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005923 [exp] 429 / 4e-150 AT1G30280 119 / 2e-30 Chaperone DnaJ-domain superfamily protein (.1) Lus10018811 [exp] 87 / 4e-18 AT1G75100 183 / 3e-50 J-domain protein required for chloroplast accumulation response 1 (.1) Lus10041769 [exp] 81 / 6e-16 AT1G75310 328 / 3e-92 auxilin-like 1, auxin-like 1 protein (.1) Lus10024270 [exp] 80 / 2e-15 AT1G75310 290 / 2e-80 auxilin-like 1, auxin-like 1 protein (.1) Lus10007394 [exp] 79 / 2e-15 AT4G36520 284 / 2e-78 Chaperone DnaJ-domain superfamily protein (.1) Lus10016079 [exp] 79 / 3e-15 AT4G12770 664 / 0.0 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10012303 [exp] 78 / 4e-15 AT4G12770 618 / 0.0 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10032709 [exp] 78 / 4e-15 AT1G75100 166 / 7e-44 J-domain protein required for chloroplast accumulation response 1 (.1) Lus10028548 [exp] 73 / 1e-13 AT1G21660 402 / 1e-133 Chaperone DnaJ-domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G081500 [exp] 250 / 7e-78 AT1G30280 228 / 2e-69 Chaperone DnaJ-domain superfamily protein (.1) Potri.004G133100 [exp] 106 / 7e-28 AT1G30280 92 / 5e-23 Chaperone DnaJ-domain superfamily protein (.1) Potri.014G042600 [exp] 88 / 2e-18 AT1G75100 261 / 2e-77 J-domain protein required for chloroplast accumulation response 1 (.1) Potri.007G022600 [exp] 86 / 1e-17 AT4G36520 306 / 7e-85 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G120700 [exp] 84 / 6e-17 AT4G36520 299 / 1e-82 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G134300 [exp] 83 / 9e-17 AT1G75100 192 / 3e-52 J-domain protein required for chloroplast accumulation response 1 (.1) Potri.005G229300 [exp] 82 / 2e-16 AT4G36520 248 / 1e-66 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G033800 [exp] 80 / 1e-15 AT4G36520 241 / 4e-64 Chaperone DnaJ-domain superfamily protein (.1) Potri.014G197600 [exp] 77 / 1e-14 AT4G12780 329 / 1e-97 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.005G181700 [exp] 75 / 3e-14 AT1G21660 312 / 3e-100 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036149 pacid=23141139 polypeptide=Lus10036149 locus=Lus10036149.g ID=Lus10036149.BGIv1.0 annot-version=v1.0 ATGGAGGAGTCCTCGCACTGGGTGGGGAGGAGAAGGAGGTTTAGGATGGGAACCCAACAAACTAATACTACTAATACTATCCTCCACCGCCGTTCGACGG AGGACTCCTCCTCAACCGCCGGACCCTCTGCCTTCTCCGTATTCAACAGACGCTCCGTCGACAACAACAACAACCACAATCTCCACCCCAACAACTTCTC TGACGTCTTCGGCGGGCCGCCCCGTACTGTCCTGGAAAGAAAATTCTCCGGAGACGACTTCACGAGGCCTTCTTCGAGTTCATTCTACGAGGTGGTATTC CGGCCACCACCAGGGTTTGTGTCTCCTCCTAAGAAGGGCGGGGGCCGGAATTTGCCCTCGTTCCGTATCCCTGCAAAAGGAGATGGTTTCTACAGTGATG TATTTGGTTCAGCGAAGTCGAGAGACAGATCCAGACCCAACTCCAAAGGGAAATCATCCAAATCCAACTCTTCTAATTCGGTGCTTAGCTCTGAAGAGTT TATGATGATGAGCCCTACCCATCATGACCCCGCCTCTGCACCCACATTGTCTTCTTCTGTTTCTTCCAATTCAAAACTCAGGCCAATTAGCGTGCCAAGC CGATGGAACTCCAACACAATGAAGCCAGCGGGAGATCCATACAATTACAACTGGTCTTCTTCTTCAGAAACCTATTTCAAAGTTGCTCAGCAGGTTTCTT CCCCTGAAACAACGACTGTGGAGCCTAATTCTAATTGGAGTACCAAAGGCTCTGGTGATGACGACGAAGACGACGGTGACGACGTTGAGCTGGAAGTCAA CAATCATGATAACGGGCCGGCTGGTTTGGATCATATGATGCAAGACCACTATGATGAAGATGATGATGTCACGACTTCTTATGTAATTGAGATCAATTCT GAGTACAATAACAGAGATGGGAATGGGAATGGGGAAGCAGTGTCCATTGATGAAGCCATTGCTTGGGCTAAGGAGAAGTTCCAGGCTTACAATGACAAAC AACAACACTCCACCAGCAAAGTACAAGATGATGAAGATTCTGAGCAGGATAAGAAAGTAGATGATACAAGGATCCAGTCTTCTTCGACGATTATAGAACC TGCAGGGTGGAATGCAATACCATTGACAAGCCTGGTAGAGAGTTCACAAGTAAAGAAGGGTTATCAGAGGGCCAGGCTATGCCTCCACCCTGACAAGTTG CAGCAAAGGGGAGCCACACCTCAACACAAGTATGTCGCACACAAGGCTTTTGTCATCCTCCAGGATGCATGGGCTGCTTTCATTTCTCAGGATGTGCTCT TCAACTAG
AA sequence Show only first row Show all	>Lus10036149 pacid=23141139 polypeptide=Lus10036149 locus=Lus10036149.g ID=Lus10036149.BGIv1.0 annot-version=v1.0 MEESSHWVGRRRRFRMGTQQTNTTNTILHRRSTEDSSSTAGPSAFSVFNRRSVDNNNNHNLHPNNFSDVFGGPPRTVLERKFSGDDFTRPSSSSFYEVVF RPPPGFVSPPKKGGGRNLPSFRIPAKGDGFYSDVFGSAKSRDRSRPNSKGKSSKSNSSNSVLSSEEFMMMSPTHHDPASAPTLSSSVSSNSKLRPISVPS RWNSNTMKPAGDPYNYNWSSSSETYFKVAQQVSSPETTTVEPNSNWSTKGSGDDDEDDGDDVELEVNNHDNGPAGLDHMMQDHYDEDDDVTTSYVIEINS EYNNRDGNGNGEAVSIDEAIAWAKEKFQAYNDKQQHSTSKVQDDEDSEQDKKVDDTRIQSSSTIIEPAGWNAIPLTSLVESSQVKKGYQRARLCLHPDKL QQRGATPQHKYVAHKAFVILQDAWAAFISQDVLFN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30280			Chaperone DnaJ-domain superfam...		Lus10036149 [exp]	0	1
AT1G22770		FB, GI	gigantea protein (GI) (.1)		Lus10028693 [exp]	1.4	0.8520
AT2G48060			unknown protein		Lus10029973 [exp]	2.2	0.8215
AT3G01100		ATHYP1, HYP1	ARABIDOPSIS THALIANA HYPOTHETI...		Lus10005223 [exp]	2.4	0.8214
AT5G40640			unknown protein		Lus10014575 [exp]	3.6	0.8537
AT5G48250	CO	COL10	B-box type zinc finger protein...		Lus10041096 [exp]	4.5	0.8354
AT5G47900			Protein of unknown function (D...		Lus10019798 [exp]	6.0	0.8146
AT5G16720			Protein of unknown function, D...		Lus10002289 [exp]	6.7	0.8427
AT1G10120	bHLH	bHLH074, CIB4	basic helix-loop-helix (bHLH) ...		Lus10006491 [exp]	8.9	0.7991
AT5G14940			Major facilitator superfamily ...		Lus10014510 [exp]	11.5	0.7912
AT1G59650		CW14	Protein of unknown function (D...		Lus10039463 [exp]	11.7	0.8201

Compare expression of checked genes

Lus10036149 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.